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MyoD (Myoblast determination protein)

Organism
Oreochromis niloticus (Tilapia)
Phylogeny
Genomic Map Locations
MyOD-1
ON_Chr.7

MyOD-2
ON_GL831688
Paralogs
Sequencing Methods
MyOD-1: Sanger sequencing

MyOD-2: Downloaded from ENSEMBL database.
Citations
  • Macqueen DJ., Johnston IA. (2008). An update on MyoD evolution in teleosts and a proposed consensus nomenclature to accommodate the tetraploidization of different vertebrate genomes. PLoS ONE 3(2):E1567. doi:10.1371/journal.pone.0001567.
  • Fish-it.org
    		•
    Sequence >NM_001279720.1 Oreochromis niloticus Myoblast determination protein-1
    AGATCAGTTTGTGACAGGACTGTACATTCCCCCAAAAGCCCCGAATCCTGGTTCACGTTTCAGTTCTTCCCTAAAAAAGA
    GAGAAAAGTTTGGTCATAACTGGATTTTCTTCTTCCTGCTGTGTTCTGGACTGAACCATGGAGTTGTCGGATATCTCTTT
    CCCCATCCCCACCGCTGATGATTTCTATGACGACCCCTGCTTTAACACCAGTGACATGCACTTCTTCGAGGACCTGGACC
    CGCGGCTGGTCCATGTGGGGCTGTTGAAGCCGGACGACTCCTCCTCTTCATCCTCATCCTCCCCTTCCTCTTCTTCCTCC
    TCCCCGTCCTCCCTCCTGCATCTCCACCACCATGCCGAGGTGGAGGACGACGAGCACGTCCGCGCCCCCAGCGGGCACCA
    CCAGGCGGGCCGCTGCCTGCTCTGGGCCTGCAAGGCCTGCAAGAGGAAGACGACCAACGCAGACCGGCGGAAGGCGGCCA
    CGCTGCGGGAGCGCCGGCGGCTCAGCAAGGTCAACGACGCCTTCGAGACCCTGAAGCGCTGCACGACGGCCAACCCCAAC
    CAGAGGCTGCCCAAGGTGGAGATCCTGCGCAACGCCATCAGCTACATCGAGTCCCTGCAGGCGCTGCTGCGCGGTGGCCA
    GGAAGACGGCTTCTACCCGGTGCTGGAGCACTACAGCGGGGACTCGGACGCATCCAGCCCCCGCTCCAACTGCTCCGACG
    GCATGACGGATTTTAACGGCCCCACCTGTCAGACAACCAGAAGAGGAAGCTATGACAGCAGCTCTTATTTCTCCGAGACT
    CCAAACGGCGGTCTGAAGAGCGAACGCAGTTCAGTGGTCTCCAGTCTGGACTGCCTGTCCAGCATCGTGGAGCGGATCTC
    CACCGATAACAGCAGCCTGCTGCCGCCTGCTGACGGCCCAGGATCCCCGACGACGACGACAACTGTGCCGGTGGGTGAAG
    CAGGCACTGCCCCGGCGACCGCTCAGGTCTCTTCTCCGACTGCCAGCCAGGACCCCAACCTGATTTACCAAGTCCTATAG
    ACCCTCACACATACATATTCAACTCGGACATTACAAAAAAAAAAAAAAAA
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    >ENSONIG00000007897 Oreochromis niloticus Myoblast determination protein-2
    ATGGATCTGTCAGACTTTCCCTTCGTTCTCTCTTCAGCAGATGACCTCTACGACCCCTGCTTCAGCACCAGTGACCTGAA
    CTTTTTTGATGACCTTGACACCCGGTTGATGCATGCCAGTTTTTTGAAGTCAGAGGACCATCTTCAGCACCACGTCCCCG
    TCACAGAAGAGGAGGACCAACATGTGAGGGCCCCTGGGGGCCTCCACCAGGCAGGTCACTGCCTGCTGTGGGCCTGCAAG
    GCCTGCAAGAGGAAGACAACCCATGCAGACCGGAGGAAAGCGGCGACCATGCGTGAGAGGCGACGACTCAGTAAAGTCAA
    CGATGCATTCGAGACACTGAAACGCTGCACAGCATCCAATCCAAACCAGAGACTGCCCAAGGTGGAGATCCTCCGCAATG
    CAATCAGCTACATTGAGTCACTACAGGCGCTGCTCAGGAACGGCCAGGATGATAGCTTCTACCCGCAGCTCGAACACTAT
    GGGAGTGACTCAGGAACCTCCAGCCCCCACTCCAACTGCTCTGATGGCTTGGTGGATTTTATCTCTCCGAGTTCAGCCAG
    AAGTGAAAACAGTGACGCTTCGTACTGCAGCCAGACAGCAGAGGATTGCAGCAGCAGCAGCAGTAAAACATCAGTCATTT
    CCAGTTTGGACTGTTTGTCCAGCATTGTAGAGAGGATCAGCACAGATCAGACTGCAGCCCCCCCTGGGGATAGCGTGGTC
    CCCCAAGGCCCTGGATCACCTCACACCGGCACTGCTATCTCCAATCTGTCTGCCGAGTCCAGCAACATTTGA
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    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by M.Iliopoulou
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