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otx5 (Homeobox protein otx5)

Organism
Danio rerio (Zebrafish)
Phylogeny
Genomic Map Locations
otx5-like-a
DR-Chr5

otx5-like-b
DR-Chr15
Paralogs
otx5-like-a,
otx5-like-b
Citations
  • Gamse JT., Shen YC., Thisse C., Thisse B., Raymond PA., Halpern ME., Liang JO. (2002). Otx5 regulates genes that show circadian expression in the zebrafish pineal complex. Nature Genetics 30(1):117-121. doi:10.1038/ng793.
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    Sequence >ENSDART00000037879 Danio rerio otx5-like-a
    ATGATGTCCTACATAAAGCAGCCCCATTATGCTGTGAACGGGTTAACACTGTCCGCCTCAGGAATGGACCTGCTCCACAC
    CGCCGTCGGCTACCCAGCCACTCCGAGGAAGCAGCGTCGAGAGCGCACCACCTTCACTCGCACCCAGCTGGACATTCTGG
    AAGCTTTGTTCACCAAAACACGCTATCCAGACATATTTATGAGAGAAGAGGTAGCTCTGAAAATCAACCTTCCCGAGTCC
    AGAGTTCAGGTGTGGTTTAAGAACCGTCGTGCTAAATGCCGCCAGCAGCAGCAGCAGACCAGCGGTCAGCCCAAGCCCCG
    TCCCCCCAAAAAGAAGTCCTCCCCTCCCCCTGATCTGACCTCTGACCCTGGCACTAGCTCCTCGGTGGTGGCTGCCCCGA
    CCCCGACCGTGCCCCCTAGTGTGAGCGCAGGCACAGCACCAGTTTCTGTATGGAGTCCCACTTCTCTTTCCCCCCTCCCT
    GATCCACTGTGTGGTTCAGGCACCCCCTGCGTGCAGCGTCCTGCTCCATATCCCATGAGCTACGGTCAGCCCTCTTCCTA
    CAGCCAGGGCTATGGCTCTTCTCCTTACTTCAGCGGATTGGATTGCAGCCCGTACCTTTCTCCCATGACCACCCAGCTGT
    CAGCAAGTGGAGGCGCCCTCTCCCCCCTCACCGTGCCCTCCATGGGCGGCTCGCTCAGCCAGTCGCCCTCTCTCTCCTCC
    CAGGGATACAGCACTGCGTCGTTGGGCTTCAGTTCGGTAGACTGCCTTGACTACAAGGACCAGCAGGCCTGGAAGCTCAA
    CTTCAGCACTGTGGACTGCCTCGACCACAAATTCCAGGTGCTGTAG
    Send to
    		or

    >ENSDART00000063835 Danio rerio otx5-like-b
    ATGATGTCCTACATGAAACAGCCTCATTACTCCGTTAACGGGTTGACTCTGTCCGGTACCGGGATGGATCTCCTGCACTC
    CGCCGTCGGTTACCCTAACACTCCACGGAAACAGCGGCGCGAAAGAACCACCTTCACGCGTGCGCAGTTGGACGTGCTGG
    AGGCGCTGTTCTCCAAAACCCGATACCCGGACATATTCATGAGGGAAGAAGTGGCTCTCAAGATCAACCTGCCCGAGTCT
    AGAGTCCAGGTCTGGTTTAAGAACCGTCGTGCCAAATGCCGTCAGCAGCAGCAGCAGCAGACCAGCGGTCAGACCAAACC
    CAGACCACCCAAGAAGAAGTCTTCTCCGGCTCGTGACTCCAGTGCCAGTGAGCCCAGCGCCAGCACCAGTGGCCCCTACA
    GCCCCCCACCACCCCCGCCTGGCACCGCCATCACCCCCAGCTCCAGCAGCGCCACCGTATCTATCTGGAGCCCGGCCTCC
    ATTTCTCCACTGCCCGACCCGCTGTCCGCCCCCAGCACCGCCTGCCTGCAGCGCTCCAGCTATCCTATGACCTACAGCCA
    AGCGCCGGCCTATGGGCAGAGCTACGCCGCCTCCTCATCCTACTTTACAGGCCTGGACTGCAGCTCGTACCTGTCCCCAA
    TGCACCCGCAGCTATCAGCCAGCGGGGGCGCTCTCAGCCCAATGAGCGGAGCCCTCAGCCAATCGCCGGCCTCGCTTTCA
    TCTCAGGGTTACACCGCCGCATCACTGGGCTTCGGCGCCGTCGACTGCTTAGATTATAAAGACCAGACGTCAGCCTGGAA
    ACTGAACTTCAACGCCCCAGACTGTCTGGACTACAAGGACCAGAATTCCTGGAAGTTCCAGGTGCTGTAG
    Send to
    		or



    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by Mara Iliopoulou
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