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Nme (Nucleoside Disphophate Kinase)

Organism
Danio rerio (Zebrafish)
Phylogeny
Paralogs
Nme2a,
NM_199970
Nme2b.1,
NM_130926
Nme2b.2
NM_130927
Sequencing Methods
Nme2a: All Quantitative RT-PCR(QPCR) were performed in triplicates. QPCR was performed using a real-time PCR kit provided with a Fast-SYBR Green fluorophore (Applied Biosystems).

Nme2b.1: All Quantitative RT-PCR(QPCR) were performed in triplicates. QPCR was performed using a real-time PCR kit provided with a Fast-SYBR Green fluorophore (Applied Biosystems).

Nme2b.2: All Quantitative RT-PCR(QPCR) were performed in triplicates. QPCR was performed using a real-time PCR kit provided with a Fast-SYBR Green fluorophore (Applied Biosystems).
Citations
  • Zhang Y., Bonilla S., Chong L., Leung YF. Irx7, a Smarca4-regulated gene for retinal differentiation, regulates other genes controlled by Smarca4 in zebrafish retinas. (2013). Gene Experimental Patterns 13(5-6):177-82. doi: 10.1016/j.gep.2013.03.003.
  • Desvignes T., Fauvel C., Bobe J. (2011). The NME gene family in zebrafish oogenesis and early development. Naunyn Schmiedebergs Archives of Pharmacology 384(4-5):439-449. doi: 10.1007/s00210-011-0619-9.
  • Hensley MR., Emran F., Bonilla S., Zhang L., Zhong W., Grosu P., Dowling JE., Leung YF. (2011). Cellular expression of Smarca4 (Brg1)-regulated genes in zebrafish retinas.BMC Developmental Biology 11:45. doi: 10.1186/1471-213X-11-45.
  • Bilitou A., Watson J., Gartner A., Ohnuma S. (2009). The NM23 family in development. Molecular and Cellular Biochemistry 329(1-2):17-33. doi: 10.1007/s11010-009-0121-6.
  • Desvignes T., Pontarotti P., Fauvel C., Bobe J. (2009). Nme protein family evolutionary history, a vertebrate perspective. BMC Evol Biol. 2009 Oct 23;9:256. doi:10.1186/1471-2148-9-256.
  • Singh SK., Sethi S., Aravamudhan S., Krüger M., Grabher C. (2013). Proteome mapping of adult zebrafish marrow neutrophils reveals partial cross species conservation to human peripheral neutrophils. PLoS One 8(9):e73998. doi:10.1371/journal.pone.0073998.
  • Ponnudurai RP., Basak T., Ahmad S., Bhardwaj G., Chauhan RK., Singh RA., Lalwani MK.,Sivasubbu S., Sengupta S. (2012). Proteomic analysis of zebrafish (Danio rerio) embryosexposed to cyclosporine A. Journal of Proteomics 75(3):1004-17. doi:10.1016/j.jprot.2011.10.016.
  • Singh SK., Sundaram CS., Shanbhag S., Idris MM. (2010). Proteomic profile of zebrafish brain based on two-dimensional gel electrophoresis matrix-assisted laser desorption/ionization MS/MS analysis. Zebrafish 7(2):169-77. doi: 10.1089/zeb.2010.0657.
  • Hippe HJ., Wolf NM., Abu-Taha I., Mehringer R., Just S., Lutz S., Niroomand F., Postel EH., Katus HA., Rottbauer W., Wieland T. (2009). The interaction of nucleoside diphosphate kinase B with Gbetagamma dimers controls heterotrimeric G proteinfunction. Proceedings of the National Academy of Sciences 106(38):16269-16274. doi:10.1073/pnas.0901679106.
  • Takezaki N., Figueroa F., Zaleska-Rutczynska Z., Klein J. (2003). Molecular phylogeny of early vertebrates: monophyly of the agnathans as revealed by sequences of 35genes. Molecular Biology and Evolution 20(2):287-92. doi: 10.1093/molbev/msg040.
  • Zhao S., Xie P., Li G., Jun C., Cai Y., Xiong Q., Zhao Y. (2012). The proteomic study on cellular responses of the testes of zebrafish (Danio rerio) exposed to microcystin-RR. Proteomics 12(2):300-12. doi:10.1002/pmic.201100214.
  • Johnston IA., Lee HT., Macqueen DJ., Paranthaman K., Kawashima C., Anwar A., Kinghorn JR., Dalmay T.(2009). Embryonic temperature affects muscle fibre recruitment in adult zebrafish: genome-wide changes in gene and microRNA expression associatedwith the transition from hyperplastic to hypertrophic growth phenotypes. Journal of Experimental Biology 212(12):1781-93. doi: 10.1242/jeb.029918.
  • Masuda Y., Oku H., Okumura T., Nomura K., Kurokawa T. (2009). Feeding restriction alters expression of some ATP related genes more sensitively than the RNA/DNA ratio in zebrafish, Danio rerio.Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology 152(3):287-91. doi: 10.1016/j.cbpb.2008.12.008.
  • Doğanli C., Beck HC., Ribera AB., Oxvig C., Lykke-Hartmann K. (2013). α3Na+/K+-ATPase deficiency causes brain ventricle dilation and abrupt embryonic motility in zebrafish. Journal of Biological Chemistry 288(13):8862-74. doi: 10.1074/jbc.M112.421529.
  • Chen K., Cole RB., Rees BB. (2013). Hypoxia-induced changes in the zebrafish (Danio rerio) skeletal muscle proteome. Journal of Proteomics 78:477-85. doi: 10.1016/j.jprot.2012.10.017.
  • Gündel U., Kalkhof S., Zitzkat D., von Bergen M., Altenburger R., Küster E. (2012). Concentration-response concept in ecotoxicoproteomics: effects of different phenanthrene concentrations to the zebrafish (Danio rerio) embryo proteome. Ecotoxicology and Environmental Safety 76(2):11-22. doi:10.1016/j.ecoenv. 2011.10.010.
  • Fish-it.org
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    Sequence >NM_199970.1 Danio rerio Nucleoside Diphosphate Kinase-2a
    GATTACTGAAAGCGCGTGGGGGGAGGAATCAACTTCAGACTCTTGGACTGCCATCAAACAATTCCAATGTCTGGGAATGA
    AGAGCGCACTTTCATCGCCATCAAGCCGGATGGGGTGCAGAGGGGACTCGTCGGAGAAATCATCAAGCGCTTCGAACAGA
    AAGGATTCAAGTTAGTGGCAATGAAGTTAATCCAGGCAGATGAGGATCTTCTTAGACAGCACTACAGTGACCTGAAGGAT
    CGGCCTTTTTTCCCTGGACTTGTCAGTTATATGTCTGCTGGTCCTGTGGTTGCAATGGTGTGGGAAGGTTTTAATGTTAT
    AAAAACTGGCAGAGTAATGCTTGGCGAGACTAATCCCATTGACTCCAAGCCTGGGACTATCCGAGGTGACTTTTGCGTTC
    AAGTTGGACGGAACATTATTCACGGCAGTGATTCTGTGGAAAGTGCCAACACTGAGATCAACCTGTGGTTCAAACCAGAT
    GAGATCTGCGATTACACCAAATGTCAGGAAAGCTGGATCAACAGCTAAATGCTTCCTTCTTTTCCGGCACATTTCTCCCT
    TTCTAGTGTTTCTCCATTAATGTACACTTCCCCCCCACCACTGTTTCTGGTGTCTGTCTTTACAATAAAACCAAAAATCA
    TTTCTACCCCAAAAAAAAAAAAAAAAAAAAA
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    >NM_130926.1 Danio rerio Nucleoside Diphosphate Kinase-2b
    CAGGATTTACTGAAGCGGCTCTGCTCCTCCATCAGAATCATGTCTGCTAAGACCGAGCGCACCTTTATCGCGGCGAAGCC
    GGACGGTGTGCAGAGGGGGCTGATGGGAGAAATCATCAAGCGCTTCGAGCAGAAAGGCTTCAGACTGGTGGCCATGAAGT
    TTCTGCAGGCCTCTGAGGATCTCCTGAAGCAGCACTACATTGACCTGAAGGACCGGCCATTTTACCCCGGACTGGTGAAG
    TACATGAGCTCTGGACCTGTTCTGGCCATGGTCTGGGAGGGTCTGAATGTGGTGAAGACCGGGCGAGTGATGCTCGGAGA
    GACCAACCCTGCAGACTCCAAACCCGGAACCATCAGGGGAGACTTCTGCATTGAAGTGGGCAGGAACATCATCCACGGCA
    GTGACTCTGTGGACAGCGCTAACACTGAGATCAGCCTGTGGTTCAAGCCGGAGGAGCTGGTGTCCTTCAAGAGCTGCGCA
    CAGCAGTGGATCTACGAGTGAACAGACAGAGATCCAGACGGGTTCTGTTCTGTTGTTCTGTGCCCTTATGCTGGAGCTCC
    CTCCTGAAGTGTCTTCGTTTCATCTCGTCTTTTCTCAAGCACTTGTTCAATAAATGCTGAAGTT
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    >NM_130927.1 Danio rerio Nucleoside Diphosphate Kinase-2b
    ATCTGCTCCTCACGCCAGGACTCACTGAAGCGGCTCTGCTCCTCCCTCAGAATCATGGCTGGTAAAACCGAGCGCACCTT
    CATCGCGGTGAAGCCGGACGGTGTGCAGAGGGGGCTGATGGGAGAAATCATCAAGCGCTTCGAGCAGAAAGGCTTCAGAC
    TGGTGGCCGCCAAGTTTGTGCAGGCCTCTGAGGACCTGGCAAAGCAGCACTACATCGACCTGAAGGACCAGCCCTTCTAT
    GCCGGACTGGTGAAGTACACTAGCTCTGGACCACTTCTGGCCATGGTCTGGGAGGGTCTGAATGTGATTAAGACCGGCCG
    TGTGATGCTCGGAGAGACCGATCCCTTCGCCTCCAAACCCGGAACCATCAGAGGAGACTTCTGCATTGAAGTCGGCAGGA
    ACCTGATCCACGGCAGTGACTCTGAGAAGAGCGCCGCTACTGAGGTCAGCCTGTGGTTCAAGCCGGAGGAGCTGGTGTCC
    TACAGGAGCTGCGCACAGGAGTGGATCTACGAGTGAACAGAGACACTTCCAGAACCGTCAGCTGGAGCTCAGAGTCCCTG
    TTCATCTCATCTGTTCTCAAACACCTGTTGAATAAATCTCTCACACACTCACACACACACAGCAGAACCCCCCCGTGATG
    CTCAGCTGGACACCCACAGAACTCACACTGATCCTCCAACACAGCTCCGCCACAGTCCAGTGTGTGTGCGTTCACTCTCA
    ACCTGAAACTGGCCTCCTGCCCTGACGCCGCAGAGGGCCGAGTGTGTGTGTGTGCTGAGGCGTGACGATCCATATAAATG
    ATTCATAACTCAAAAAAAAAAAAAAAAA
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    Organism

    GO term(s)

    Gene Expression

    Gene Structure

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    Phylogeny (Gene Tree)

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    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

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    Data input by Panagiota Goutakoli
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