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Neurolin (ALCAM)

Organism
Oryzias latipes (Medaka)
Phylogeny
Paralogs
neurolin-a,
XM_004076330
neurolin-b
XM_004075351
Citations
  • Kasahara M., Naruse K., Sasaki S., Nakatani Y., Qu W., Ahsan B., Yamada T., Nagayasu Y., Doi K., Kasai Y., Jindo T., Kobayashi D., Shimada A., Toyoda A., Kuroki Y., Fujiyama A., Sasaki T., Shimizu A., Asakawa S., Shimizu N., Hashimoto S., Yang J., Lee Y., Matsushima K., Sugano S., Sakaizumi M., Narita T., Ohishi K., Haga S., Ohta F., Nomoto H., Nogata K., Morishita T., Endo T., Shin-I T., Takeda H., Morishita S., Kohara Y. (2007). The medaka draft genome and insights into vertebrate genome evolution. Nature 447(7145):714-9. doi:10.1038/nature05846.
  • Lowe TM., Eddy SR. (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Research 25(5):955-64. doi: 10.1093/nar/25.5.0955.
  • Fish-it.org
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    Sequence >XM_004076330.1 Oryzias latipes CD166 antigen homolog A-like
    ATGTCTGCCAGGGAGTCTGTTGGTGAGCTGGATATCACTAGTGACCCTCAGATTTCTCCATATCTTTTAACCCTGTATTA
    TTGTTTCATTTCAGTGCAAGGACATGAAAATATCACCGCATGGTATGGAAAGACCATCACCGTACCCTGCAATGGTGGAA
    AGGTGCCTGTAGATGGTTTGGTTTTTGTCAAGTGGAAATACGCAAAGGACGATGGGACCCCAGGAGATCTATTGATTAAA
    CAAAGCACCAGCGATCAGGTCACTATTCTGGCTTCAGAGGAATATGCTTCTCGCATCAGCATGGAGAAGGATTTCTCCTT
    GCTCATCAGCCAAGCATCACTCAGAGATCAGAGAATCTTCACCTGTATGGCAGTGTCCCCCTCTAACGTGAACGAGTATT
    CCGTCAATGTTGAAGTGAAGAAAAAACCGTCTTCAGTGGAGATAATTGACAAGCCGGAAGCACTGAAGAAGGATATACTG
    ACCACAGTGGGAACTTGCATTGTAAAAGATTCAAATCCTGCAGCCACCATTACATGGACAAAAAATAAAAGCACCTTAAA
    TGCTGACGGAAAAGGTGTCTTCATCACTCCCAGTGTGAAGGTGGATCCTGCTACAGGCCTGTCCACATCCCACTCCACGC
    TCCAGTATGTAGCAGCCAAAGAAGATGGTGGGGCTGTGTTCACCTGTGTGTCCACTTATGAGGGGATTCACAATGAGACC
    AACCTGGAACCGCTAGCTGTTCATTATCCATCCGAGAGAGTTCGTCTTGATATTGTATCCAAGACCCCAATTGTGGAGGG
    GGCCAATGTGACGCTGAAGTGTGCCGGTGATGGAAACCCACCACCGAACTCCTTTTTCTTTCATAAAAAGGGCACGAAAA
    CACGGGTTGAAAAAACAGACATCTTCACTTTAACTTTGGTCAGCAAAGAAGACACAGGCCTTTACAAATGCTCTCTTCCT
    GAGAATGAGAAACTCAAAGCCTCTCAAAACATCACTGTTCACTATGTTCATCTGGATCTCAGCCCCTCTGGGAGGGTTGT
    CAAAATGATCAGGGACCCATTTTCTATCAAAATTGACCTGAATACTTCAGTGGACCCTCAAATCGTATGGACAAAGGATG
    GAAATTTGGTGAGTCAGCCAGAGTTTCTGAGGCTACACTACGGGGATGCAGGTTCTTACTCCTGTAAGGTCTCCATACCT
    GGACTAACAGTGAAGAAAAGCGTTGAACTCGTCGTAGAAGGAATACCTGTGATCACCAATCTGACTCAAAACAATGACGA
    ACTAAAAGTTCTGACATGTGAGGCTGAGGGAGCACCACAACCCCAGTTCAAGTGGAGCATCAACGGCACCGTTATAAAAA
    CCTCATACACTAAAGGAAAGGCCATTGAAATATTTAGCATCTCTGACACAAACCTGCTGGTCGCCTGCAATGTCAGCAAC
    AAACTCGGAGACGATGTGAGGACCATCAATGTTACCTCTGATGACTCAACAAACACCTCAACTATCGTCATGGTGGTCTT
    AATTCTGTTCGTACTGGCTGTTGCAGTCCTGGGAATCGGCTATTGTTTGTACACAAAGAGCCGGGCAGGAGAATTTAGTC
    CTGTGCCGGGAAATGAGACACAGAACGTACAAACACCACCGGACAGCTCCAACCACACTGCTTAA
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    		or

    >XM_004075351.1 Oryzias latipes CD166 antigen homolog A-like
    GTGCCACGTAGGCTGGAAGAAACTGAAACTACTACCAGGCGCGCGAGGACAAATAATTCTTTACATCTGATAAAAGAGCA
    CGGTGTTTTTGTTTTTGTTTGTTTGTTTGGTTGTTACCTTGAAATTTGACGGAGGATCTGACAGACCCGCGAGGATGCAC
    TTGTTGTCAGCCAGATGCGCTTGTGCGCTGCTAATCCAGGCGCTCTTCTTTTGCCAAGTCAAATGTATGCCGAGTGTTCG
    CGGCATGTACGGGGAAACCATAGAGATTCCCTGCGACCCATTCATCCAAACAGAAAACACCATGATGATCAAATGGAAAT
    ATCAAAAAACAGACGGGTCTCCACAGGATCTGATAGTCAAAAGCAAAGACCAGGACCCCCTAATCTCCGTCCCCGACGCA
    CTCAAGCATCGTGTGAGCATGGTGGCCAACTCCAGCCTGCTGCTGTCTGGCGCCAGGCTGACCGACCAAGGGACTTTCAC
    CTGCATGGTGGTGACCACTGCTAACATTTTTGAACACCAAATTAAACTGGAGGTTCTAAAGTCGCCTGAAGGCCTGGAGA
    TATTTGACAAGGCAGAGGAGCTGGAGATTGGCAAACTCACTAAGCTGGGAGTGTGTACTGCAAAGAATGCGAACCCAGCT
    GCAGAAATCATGTGGTTAAAGAACAACCAAGCTCTGATGGATGACGGGAAAGGGATTTTCATTACAAAGGATGTGAAGGT
    AGACCTCGGTACACTCTTGTCGACCACAACCTCCACTCTGAAGTACTCCGCCCAGAAGGAAGACGACGGCGCTGTGTTCA
    CCTGCCGCGCTAAGCACATTGTGGGAGAGCCCATAACTTCTTCGATTACTCTAAACGTCACCTACTCCCCGGAAACTGTC
    GAACTTCTCGTCACTCCTCAGGATCCTCTTGTGGAAGGAGATAACATGACTCTGAAGTGTGTGGCAGATGGAAACCCTGC
    TCCCACCAGCTTTAACTTTCACCTCAAGGGGGAGACAATAAAAGTAGAAAACCAAAACGCGTTTACCATCACAAACGTCA
    CACGTGATGCATCTGGTGAATACAAGTGTTCTCTAATTGATGACCGCGGACTGGAAGCCTCCAAGAACGTCACAGTCAAC
    TACCTAGACATTAATTTAAGCCCCTCTGGGAGGATTGAGAAGCTTGCTGGCAAAGCGCTGGAAGTAACTCTTCAGATTTA
    CTCTTCCGCTGCACATAGCGTTTCATGGAAAAAGAATAACCGCATTTTGGACAACGAGCCAAAGTTCCCCAAGATCGCTT
    ACTCTGACTCTGGCGTCTACGAGTGTGAGGTGGCGTTGGGACCCCTCAGCCGGAAAGCATCTTTTGAGCTTGTTGTCCAA
    GGTGCTCCGGTTATCAGCAGTTTGTCCAAACACAGCAGTGACGACGGCAAATACAAAGTCCTCACTTGTGAGGCCGAAGG
    ATTCCCAAAGCCAGCAGTTACCTGGAACATCAACGGCACTTTGATTACTGAAAGTCCCTTCAGCAACGGAAAGATAATCC
    AGAAGTTTGCAGTTGTGCCATCTGAAAACCTCACCGTCCAATGCACAGTGTCCAACAAGTTTGGCAGTGATTCGAAATCT
    ATCGATGTGCTTCCTTTATTAAAGGATGTGACATTCAAATACCAAGACACGCATGTGAGCAGAGATCAAACCAAGCTGGT
    AGTTGGAGTTGTGCTGGGCCTCCTCGTCGCCACTGTGCTCATTGGCCTGGCGTACTGGCTTTACTTGAAGAAATCCAAGC
    AAGGAAGCTGGAAGACTGCAGAGAATGAAAACGGTTCCTCTGAGGAGGAGAAAAAGCTGGAGGAGAAAGTGGAGGAGAAC
    AGTCAGAAAGCTGAAGTGTAAAGAAAAGCTGTCCATTCTATAAATGGGGAAGTGAGAGTGAGAACATAGAACTTTTGCAC
    ATTTCTGTCCTGAGCGTGGGAATAAGAGTGTGCATTTGGACGAAGACAGCTTGGTTTCAGGGAGACTTCTAGAAAAAAAC
    ATATCCACACATTCTCTATGCTCCACAACTCCTCACCCCCCCCATTTATGAAAAGAATAAAAAAAATGGAATGGATATTG
    TGTGTGATATACATAACTCGTCTGCACTACTGAAGCCTGTGTAAAACTTGTCTACTTTTAGGATTCATGTCAGTTAGAAT
    GGATTTTTTGGGGAAAGTGTGAAGATTCAGATCTTTTTCTTTAGCTGTCTTTAGTTGATGCAAATAAAGTTTTAAACTAG
    ACCAGTTGCCTTCTCTGTAAGGATGTGTAGTTCTGCATTAGTCTGCCCCCACCCCACACAAACACTTTCCCCACGTCTTA
    TTAGTTGAATCTCTGTGAAGCCACCTCTGCTTCAACATCAGTATACAGTAGTAGTAAACGTGTTAATTCTCCGCTCATTA
    ATGTGGC
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    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by P.Goutakoli
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