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CTSD (Cathepsin D)

Organism
Ictalurus punctatus (Channel catfish)
Paralogs
Citations
  • fish-it.org.
  • Feng T., Zhang H., Liu H., Zhou Z., Niu D., Wong L., Kucuktas H., Liu X., Peatman E., Liu Z. (2011). Molecular characterization and expression analysis of the channel catfish cathepsin D genes. Fish Shellfish Immunology 31(1):164-169. doi:10.1016/j.fsi.2011.04.006.
  • Chen F., Lee Y., Jiang Y., Wang S., Peatman E., Abernathy J., Liu H., Liu S., Kucuktas H., Ke C., Liu Z. (2010). Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). PLoS ONE 5(7):E11546. doi:10.1371/journal.pone.0011546.
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    Sequence >JF415913.1 Ictalurus punctatus Cathepsin D-a
    AAAAAAAAAATGAAGCTCGCCTGTTTGCTGCTCCTGGTTCTTGCTGCATGGACGGCCGACGCGGTTGTTAGGATCCCCCT
    AACGAAGTTTCGCTCCATAAGGCGCTCAATGTCCGATTCAGGCCGATCTGTGGAGGAACTCTTGGCCAACTCTCGGCACA
    TGAAATACAACCTGGGTTTCCCACCCAAATCCGGCCCAACCCCTGAAACACTAAAGAATTACCTGGATGCCCAATACTAT
    GGTGAGATAGGTCTTGGCAGTCCAGTCCAGACCTTCACTGTGGTGTTTGACACGGGCTCCTCCAACTTGTGGGTGCCGTC
    TGTCCACTGCTCCCTTACTGACATTGCATGCTTGCTTCATCACAAGTATAATGGAGCCAAATCCAGCACATATGTGAAGA
    ACGGTACTGCTTTTGCTATCCAGTATGGCAGCGGGAGTCTTTCTGGCTATCTCAGCCAGGATGTCTGCACAATTGGAGAC
    ATTGCTGTAGAGAAGCAGATATTTGGCGAGGCCATCAAACAGCCTGGAGTTGCCTTCATTGCTGCAAAGTTTGACGGCAT
    CCTGGGCATGGCTTACCCTCGCATTGCAGTAGACGGTGTTCCTCCAGTCTTTGACATGATGATGAGCCAGAAGAAAGTGG
    AGAAGAATGTCTTCTCTTTCTATCTGAATAGGAACCCAGATACGCAGCCTGGTGGTGAACTACTCCTGGGAGGCACAGAC
    CCAAAGTTCTACACTGGAGACTTTCACTATGTAAACATCACCCGACAGGCTTACTGGCAGATTCACATGGATGGCATGAC
    CATTGGCAGTCAGCTGACCCTTTGTAAGGGAGGCTGTGAAGCCATTGTGGACACTGGCACGTCTCTGATCACTGGACCTG
    CTGCGGAGGTCAAGGCTCTCCAAAAGGCTATTGGAGCCATTCCCCTGATTCAGGGAGAGTACATGGTTGACTGCAAGAAG
    GTGCCTTCCCTTCCCACTATCTCCTTCAATTTGGGTGGGCAGACCTACACGCTGACTGGAGAACAGTACATTCTCAAGGA
    AAGCCAGGCTGGTAGAGAAATCTGTCTGAGTGGATTCATGGCTCTGGATATCCCTCCTCCTGCTGGGCCGCTGTGGATTC
    TGGGAGATGTGTTTATTGGGCAGTACTACACTATGTTTGACCGTGAGAACAACAGAGTGGGCTTTGCTAAGGCAGTTTAG
    GTCCATCTTACCGTAGGCTTGTCTTTTTGAGCAAAGGGTAGGAAAGGAGTAAGAATGGGAGTGGATACAGGAGAACTCCC
    CACTAGAATCATATCAGCTGCTATTATAATCACTAAGCAGTTATGATAGCATTGTGTTTGCACCGTACTTTAGCTCCTCA
    ATTCTCCGTTTCAATGAGCTTGAAGCTGAACAAATCAGGGAAAGGCCAAGAAGTACTACACACACTTGCAAAGTAATGAC
    TTATGGTGTTTAATTGGCAGTAGACAGGAAAGGATGTATATGATTTTAATGGATTAACATGTTTTATGTTATTGATTTTA
    TGAAGCTATTGTGGGTGTGTTTTTTTCCTTTTCTTTTTTCTTTCTTGGTCTTCACTGAAAATACCTCGAGTAAAATTGGA
    TAAAGTACAATAAACCTTTTTAGAAC
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    >GU588646.1 Ictalurus punctatus Cathepsin D-b
    GGTGTAAACATGAAGAATCTCGGACTGATTCAGGGATTATTGCTGTTTTTTATGAGCAGTGACGCCATTATCAGGATTCC
    TCTGCGGCGGATGCCCTCTGTTCGCCGCATGCTGGTGGACAACGCTCTCGCTCAGGGCAAGCTGAAATTGTGGAAAGCGG
    AGGAAGGCAGTGACATGGCGTGGGGCACGGACGCCACTCATTGTCCGGTGGAGAAACTCTCAAATTTCATGGACGCTCAG
    TATTACGGTGTGATCAGCATCGGGACTCCGCCGCAGGAGTTCACCGTCCTGTTTGATACCGGCTCCTCCAACCTGTGGGT
    TCCCTCCATCCACTGCGCCTTCTTCGATCTGGCCTGCTGGCTCCACCATCGATATGACTCCAAGAAGTCGAGTACATATG
    TACAGAACGGTACTCAGTTCTCCATCCAGTACGGCAGAGGAAGTCTGAGCGGTTTCTTCAGTCAGGACACGGTCACGCTG
    GCAGGTCTGGGTGTACAGAACCAGATGTTTGCCGAGGCGGTGAAGCAGCCAGGCGTGGTGTTTGCCCTGGCGAAGTTTGA
    TGGCGTGCTCGGCATGGCATATCCTATCCTGTCAGTGGGAAAAGTCCGACCTATATTCGACTCCATCATGGCTGGCAAAC
    TCTTGCAGCAGAACATCTTCTCCTTCTACATCAACAGGGACCCTAAAGCGGAGGTCGGGGGGGAGCTGATGCTGGGTGGT
    TGTGATAAGCAGTATTTTGATGGAGATCTTCACTACCTGAACGTCACCCGGAAAGCTTACTGGCAGATCAAGATGGACAC
    AGTGGAGGTGGGAAGCACACTGACACTGTGTAAGGACGGTTGCCAGGCGATTGTCGACTCGGGAACGTCCATGATCACAG
    GGCCTGTGGAGGAGATTCGAGCTCTGAACAAAGCCATCGGGGCCGTCCCTCTGATCATGGGGGAGTACTGGATTAGCTGC
    AGTAAAATTCCCTCATTGCCGGTGGTTTCCTTCCATCTGGGAGGGAAAGTGTTCAACCTGACTGGAGGGGACTACGTGTA
    CAAGTCCACAAAGATGGGCGTGTCTGTGTGTCTGTCTGGTTTCATGGCGTTGGACATACCGCCCCCTGCTGGTCCTTTGT
    GGATCCTGGGAGATGTTTTTATGGGCCGTTTCTACACCGTCTTCGACCGAGACAACAACCAAGTGGGATTCGCTCCTGCC
    AAGTGATTCCAGTGAACCTTGAGCTAGTGGAGAAGAAACCAGGAACATGAGAGAAGTACAGCATTTGGACTAAAACTATG
    CAAATCTGATTGTTGCACTGAGACATGGATTTGCACTGCGCTGGCTTTCAGCTGTGAAACTTGAAATAAAGAAATGTGTG
    TTTTATTAAAACAAAAAAAAAAAAAAAAA
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    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by M.Iliopoulou
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