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Neurolin (ALCAM)

Organism
Danio rerio (Zebrafish)
Phylogeny
Paralogs
Neurolin-a ,
NM_131000
Neurolin-b
DQ279080
Sequencing Methods
Neurolin-a : Zebrafish neurolin genes and transcripts were identified by a combination of database searches, reverse transcription-polymerase chain reaction(RT-PCR),and 5'-rapid amplification of cDNA ends (RACE).

Neurolin-b : Zebrafish neurolin genes and transcripts were identified by a combination of database searches, reverse transcription-polymerase chain reaction(RT-PCR),and 5'-rapid amplification of cDNA ends (RACE).
Citations
  • Kanki JP., Chang S., Kuwada JY. The molecular cloning and characterization of potential chick DM-GRASP homologs in zebrafish and mouse. (1992). Journal of Neurobiology 25(7):831-45. doi:10.1002/neu.48025070.
  • Diekmann H., Stuermer CA. (2009). Zebrafish neurolin-a and -b, orthologs of ALCAM, are involved in retinal ganglion cell differentiation and retinal axon pathfinding. Journal of Comparative Neurology 513(1):38-50. doi: 10.1002/cne.21928.
  • Fish-it.org
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    Sequence >NM_131000.1 Danio rerio Neurolin-a
    CCGTCTAAGCTCCAGACTCCACCTGCGCTCTGTAGAGCAACCCGTCTGATCTTTCAGCGCACTCAACTCTCAATACTATC
    TAACAACTTCAGACCTACATCTCTCTCTATTGAGACTGTCGCCGGACTGTATAAAGGAGAACCGGGGTTTTCTTTAAGGA
    TGCATTCGGTTATCTGCCTTTTCGGTGCCTTCATAGCAGCCGCTTTGTTTGCTCCAGGGAGCTGCCTGCCGACGGTTATA
    GGTCTGTACGGTGAGACCATCGAAGTGCCATGCAACAATGGAAATAACAAGCCAGATGGCCTTATTTTCACCAAATGGAA
    ATATGCAAAAGATGACGGCTCCCCTGGCGATCTACTAATAAAGCAGGCACAGAAAGATGATCCGACTGTGTCTGCTATGG
    ACGGCTACAAAACTAGAGTTAGCATCGCTGCTAATTCCAGCTTACTGATTGCCCAGGGCTCTTTGACTGACCAAAGAGTC
    TTCACCTGCATGGTGGTGTCTTCAACTAATCTGGAGGAATTCTCTGTGGAAGTTAAAGTTCACAAAAAACCATCAGCCCC
    TGTAATCAAAAACAAAGTGAAAGAACTGGAAAATGGCAAACTGACGCAGTTGGGGGAATGTGTGGTGGAGAGCGCCAACC
    CAGCAGCAGATCTCATCTGGATGAAGAACAACCAGGCTCTGGTGGATGATGGCAAGACGATCATTATCACATCAGATGTC
    ACCAAGGACCCAGTCACCGGTCTGTCCAGCACCTCTTCCAGACTGCAGTACACAGCAAGGAAAGAGGATGTGGCATCACA
    GTTCACCTGCGTTGCAAAGCACGTGACGGGACCCAACCAGGTTTCAACACCCGATACCTTCCAAATTCGCTATCCCACTG
    AGAAGGTGAGTCTACAGGTTGTCTCTCAGAGCCCCATTAGGGAAGGTGATGATGTGACTCTGAAATGCCAGGCGGACGGA
    AACCCTCCTCCTACTAGCTTCAACTTTAACATTAAGGGAAAGAAGGTCACGGTGACGGACAAGGATGTCTACACACTGAC
    CGGCGTCACCCGAGCCGACAGCGGTGTGTACAAGTGCTCTCTGCTTGACAACGATGTGATGGAGTCCACTCAGATCGTCA
    CAGTGAGCTTTCTGGATGCAAGCCTCACTCCTACAGGCAAGGTGTTAAAAAAGCTCGGGGAAAACTTGGTAGTGTCTTTG
    GAGAAGAATGCCTCTTCTGAAGTAAAAGTGACGTGGACTAAGGATAACCGTAAACTGGACAAACTGCCTGATTTCTCCCA
    GTTGAGATACAGCGACGCGGGCTTATACGTGTGTGATGTGTCCATTGAAGGAATCAAACACAGCTTTTCCTTCGAGCTTA
    CTGTGGAAGGTGGTCCAAGAATTACCGGCCTGACAAAGCATCGCAGCAATGACGGAAAACACAAAGTGTTGACGTGCGAG
    GCAGAAGGTTCACCTAAACCTGAAGTGCAGTGGAGTGTCAACGGAACCGACGATGAAACATCGTATGTCAACGGAAAAGC
    CACATACAAACTGACGGTGGTCCCGAGTAAGAACCTCACCGTCAGCTGCCTCGTGACCAATAAACTCGGTTTCGACACAA
    AGGACATCAGCGTGTTTTCCCTATTTGAGGAGGACAAGCCCAAACCAGGAAAAAATGAAGATGGCGCAGACCAAGCCAAA
    GTGATTGTGGGTGTCGTGGTTGGACTGTTTCTAGCCGCTGCCCTGGTGGGACTCATCTACTGGTTGTATATCAAGAAAAC
    AAGACAAGGCAGCTGGAAGACCGGAGAGAAGGAGACTGGCACTTCAGAGGAGAGTAAGAAACTGGAGGAGAACAATCATA
    AAGCAGATGTCTAAGAGTGGAGAGAGCCGTCAAACGGAACGAAGAAGGTTTGAACCAGGAAAGAGGCCTTGTCACACTGA
    ATGTGCAGTACTACACACTTCGATCTTCTTATTCCAGACATCTGATTGGACGGCGACGCCTCCTTCTGGCTGCTCGTGCG
    CATACCGCATCGCAGAATGTTTCCAAAATATTTCCTACTCCAAACAAACAATTTCCT
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    >DQ279080.1 Danio rerio Neurolin-b
    AAAGTTTGAATTTACTGACGTACCCAACGAGTGTTGTACTTTCCAGAACATTATCCAACAACGACGCTCGTTAGGCAAGG
    ATATTATTTCTCAGGAGTGCAGAACTATCGCAGACTGCAGAAAGATGCAGCGGACCGCCTTTTTAACGTGTCTGCTCACC
    GTGTCCCTCATGAATCAAGTGTGGGGTTTGGAAACGGTCACTGGCAAGTACGGAGACACTGTTGAAATCCCATGCAACAG
    TGGACTTGTCTCAGACGTAGGAGTCACGTTTGTTAAGTGGAAATCTGACAAAGATGGCAGCATTCTGGTAAAACACACGG
    GTCAGAATGCCTCCTCTCCCACTGATGGTAACTACAAGAACAGAGTCAGTATTAAAAAAGATTTTGGTCTCATCATCACA
    CAAGTGTCCCTGGCGGATCAGAAAACCTTCACCTGCATGGTTGTGGCAGCAGATGACATTTTGGAGTATCCTGTCCAACT
    GGTCATTTACAAGACTCCATTGCAGCCTCAGATTGCAAACCTAACCACTGCGATGGAAATCGGAAAGCTGACTACATTGG
    CACAGTGTCATACTGAAGGTGCCAATCCAGCTGCCAACATCACGTGGTTCAAGAACAAAACTCCGCTTATTGCTGATGGA
    ACAGCCATTAAAATCACCAATGATGTGGCTGTTGATAAAGCGACAGGACTGTCTGCCACTACATCTAAGCTGGAGTACAC
    TGCAGTGAAGGATGACATTAATTCCAAGTTTACCTGTCAGGTTCAGCACATTAAGTCTGCTAACATGGATTCCTCACCGC
    TCGTCTTCACCGTGAACTACCCTTCGGAGACGGTCAGTTTCCATGTGCTGCCCGATGGTCCTGTTAAAGAAGGAGACAAT
    GTGACCCTCAAATGCACGGCAGACGGAAACCCCCCACCCTCTCGCTACAACTTCTACATCAATGGAGAGAAGAAGACAGT
    GGAGAAATCGAACATCTTTATCTTGAGTAATGTAACTAGGCAAAACACCGGAGAATACAAATGTTCATTGGTGGATAATG
    AGATATTGACGGCGTCTAAAAATATCACCGTTGAATATCTTGATGTGATTCTTAGCACCACTGGTAAGGTTTTCAAGAAA
    CTTGGCGATAGCTTTGAAACAACTCTCGATATTAAAGCTTCAGGAAAAACAGAAACCTTTTGTAAGAAGGGTGGTGAAAA
    GCTGGTTGGCCCTCCTAAATTTGCCAGCTTAAAGTACACAGACTCTGGTGTGTACGAGTGTGTTGTTACAATGCTTGGCC
    TCAAGAAGACACAGACATTTGACTTGAATGTTCATGGGCAACCACTGATCAAGAGCCTGACCAAGAAGCGTGGTGATGGT
    ACAAACAAGATCCTGAGCTGTGAAGCTGAAGGATCACCAAAGCCAACGGTGCAGTGGATTACCAATGGCACAGATGTGAA
    ATTTCAAGAGAGCGAACATGTGAATGGAAAGATCACATACTATATCACTGTCAGTCCAAAGGCCAATGTCACTGTGTCCT
    GCACAATCTCCAATGATTTGGGTTCTGACACGAGGAGCATCGATGTGTCGTCGCTTGTTGAGGACGTGACAATGGACAAA
    CAAGATCAGTCAGAGGACTACAGTGACCAGACGGCGCTGGCTGTTTGCATTGTTGTTGGCTTGATGCTGGCAGCACTTTT
    GATAGGACTGGCCTACTGGCTGTATATGAAGAAATTCAGGCAAGGATCCTGGAAAACCGGAGAGAAGGAAGACGGGTCAG
    CAGAGGAGAGCAAGAAGCTGGAGGAGAATCAGAGCCAAAAAGCTGAAGTGTAATGACAAAGACATTCAGGGATTAATTTG
    ATTAAAATCCCATTTTCCCTGAGAGATGGAAGGAAAAACATTGGTGGAGTCTGTGAAAAATGGAGTCAGAAGCTGTAATG
    GAGGACTTGAGTAGCTGTGTCAGTTACATCGCCACCATTGTCTGTAACGTGTCTGTGCCTCCACATGTCGGGGCATTTAA
    TTGAATTGAATTCATAATGCGTGTTGTAAAATATGTGAATCTTTTACATTTGAAGATCCAGCTTGTTCGGAAACCCGTGT
    CTGTTAAGTGTTCCTGGGTTTCACATTTGATCGTTGTTTTTATTTGATTTTATTTCTTTTGTCCTAGGTATTTAGTTAAT
    GCAAATTAGTTTTTTGCAGTTTCATATGGTAGAAACACTGTGGCCTTTAGTGTCTGTAACGGATTTTTTCCTTTAGAATT
    ACACATAGTAATCTGTGGCTTGAATACGAAGCATGT
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    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

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    Molecular Markers


    Data input by Panagiota Goutakoli
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