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otx2 (Orthodenticle homeobox 2)

Organism
Maylandia zebra (Zebra mbuna)
GO term(s)
Molecular Function: GO:0003677, GO:0003700
Cellular Component: GO:0005634
Biological Process: GO:0007275
Paralogs
Sequencing Methods
otx2a: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014447372.1) annotated using gene prediction method: Gnomon.

otx2b: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014445484.1) annotated using gene prediction method: Gnomon.
Sequence >XM_004542103.1 Maylandia zebra otx2a
AAAGGTTTACCGCAGGCACATAAATCCTTCACAGGCCCATGACCAAAAACCGAGCGCCTAACAACTGAACATGATGTCCT
ATTTGAAGCAACCGCCCTACACGATGAACGGACTGAGCTTATCTACCTCAGGAGTGGACCTGCTGCATCCTTCCGTGGGA
TACCAAGCAACCCCCCGCAAACAGAGAAGGGAGAGGACGACCTTCACTCGGGCCCAGCTCGACGTGCTGGAGAATCTGTT
CGCCAAGACTCGGTACCCGGACATCTTCATGAGAGAGGAGGTGGCCTTAAAGATCAACCTGCCTGAATCCAGAGTGCAAG
TGTGGTTTAAAAACCGACGGGCCAAACATCGCCAGCAGGCCCAGCAAACCCAGACTGGCGTGCAGAACAAGGCTGTCAGC
AGGCCGGTGAAAAAGAAAGGCTCGCCAGTCCGAGAGGCCAGCTCAGAGAGCGGAGCCAGCGGCCAGTTCACGCCGCCTTC
GAGCACATCAGTCCCGGCTGTGAGCAGCAGTGCTGCTCCCGTGTCCATCTGGAGCCCTGCTTCCATCTCCCCGCTCTCAG
ACCCACTGTCTACCTCCTCCTCCTCCTGCATGCAGCGCTCGTACCCCATGACTTACACCCAGGCGACGGGCTACAACCAG
GGTTACACGGGCTCCTCGTCCTACTTCACGGGGATGGACTGCAGCTCCTACCTTTCGCCCATGCACCACCAGCTCTCCGC
CGCAGGCTCTGCCATGAGCCCCATGAGCAGCAACGGGGTGTCTAGCCACCTGAGCCCGGCGTCGTCCCTCTCCTCCTCGG
CGTATGGACCAGCGGGGCTCGGGTTCAGTGGCTCTGCAGACTGCCTGGACTACAAGGACCAAACAGCCTCCTCGTGGAAG
CTCAATTTCAACGCGGACTGTCTGGATTACAAAGACCAATCAGCGTGGAAATTCCAAGTGTTGTGAGGGGTACGAAATAA
ATGGACAGCTGTCGTTAACTGCAGACTGTACAGGCAAATTAAAGCCCAAGGTTTGGAGAGGCAAGTGTGGCGTTTCCCCC
CCTCACACACCACCACGACCACAGGCCCTAACTTCTACCTCGGGGCAAAGCATAGACGAGGACTGGCGGGCGGCTGTCTC
GCGTGTTGGGCTAACTTATTAAAAATACACTGACTTCTTAACTTTGATCAAGGGAACGGAACAAATTTGTTAACCAAAAG
TGAGGAAAAGGATCAAGAGATCGAAAGATCCGAATCCTAACTTGGTTGAGTTTGAGGGACATGGTCATGTTTTCTCCTTA
GCTACTTAAAGACTCCCTTCTTGTCTTTTTTTTGTTTTGTTTTTATTATTAATTTTGCTGGATCGCTGAAGAGCCCCTTT
GATGAAAACGCTGCGCAGGAGAACGTGTGCTTGCGCTGTGAGTGAGTGAGAGCAGCTCTGAACATAAACCTGGATGCACT
ATTTAATTTATGAGAAAATATGTGGAAGTTACGAGACAATCAGTCCATGTGCGTGTGAGCATAAAATCCCTGATGTGTTT
ATTTTGCCCTTGTGTCTGTATTTTTTTTGTACAACCTGTATGCAATTGCGCTTTGCGCAAAACCCGTGTGCCACGAGCCA
GCTGTGAATTTGATAGTTTTTTTAATGTCTCGGGTGTTGTTGATAAATTATTATAAGGAGATATTAGTTAAAATAGGGAG
TGCACGATGAATGAAGCAAGCAGTGAGGAATTTCACTCGAGCTGTAAAGGGCGGGGGGTGGGGTGGGGGGCAACAAACGA
ACACACTAAAATCCCAATAAA
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or

>XM_004540630.1 Maylandia zebra otx2b
CTCAGTCCTGCGGCTCCCATTGGCTGGCACTTTGTACAAAATCTAACTCAAACCACTTCACTCACAACACACCAACAAAT
CCTAAAGGCGTACATGCAGCCTCCCTCCTTCACTCCGCCGCTGTCGCAACGCTTCAGAACCTCATGTAGGCGCTCAACGC
TTAACTTTTATCTCCAGTGAAGACGGCTGCTCCTGCTCTGCTCGGGTTTGTGATATTCTCCTTTTATGCGACAGGACGTC
GTCGATTTCTACTGACTTTTATTATTTCTCCCGGAGGACACCAAGTAGACAAAGAATTTTCCAGTCATCCCTGCCAAGGT
GCCAGGTGTAATACGGACCACACGGCGAACAGAGGACACCGAATACTCCTCGGGAGCTCCATCAATTTTCAAAATTTTCT
CCAACTTCAGCACTCAGACAAACATTAGCATGATGTCGTATCTAAAGCAACCACCTTACACAGTTAATGGCCTCAGCTTA
ACTACTTCCGGCATGGATCTTTTACATCCATCAGTGGGCTATCCAGCCACTCCACGGAAGCAGAGGCGAGAACGGACTAC
TTTTACGCGCGCACAGCTCGACGTTTTGGAGGCGTTATTTGCTAAAACTCGGTATCCTGATATATTCATGCGCGAAGAGG
TAGCGCTGAAAATCAATCTACCTGAATCCCGGGTACAGGTCTGGTTTAAAAACCGGCGGGCAAAGTGTCGCCAGCAGCAG
CAGCAGCAGCAGAATGGGGGGCAGAACAAAGTGCGACCTGCCAAAAAGAAAAGTTCCCCAACCAGAGAAGTGAGCTCGGA
AAGCGGGGCCAGCGGCCAGTTCACACCCCCCACCAGCACCACCACGGTCCCCGCCATCTCTACCAGCACCGCGCCAGTGT
CCATATGGAGTCCGGCGTCCATTTCTCCCCTCTCAGATCCCTTATCTACCTCCTCCTCTTGCATGCAGAGGTCTTATCCC
ATGACCTACACACAGGCCTCGGGCTACAGCCAGGGCTACGCCGGGTCGACGTCCTACTTCGGGGGTATGGACTGCGGCTC
TTACCTCACTCCCATGCACCACCAGTTGTCAGGCCCGGGGTCAACTCTCAGTCCGATGAGCACAAACGCAGTCACAAGCC
ATCTGAACCAGTCCCCGGCGTCCCTCTCCACCCAGGGATACGGGACGTCCGGCCTGGGCTTCAACTCCACAGCAGACTGC
TTGGATTATAAGGACCAAGCGGCATCGTGGAAGCTGAACTTCAATGCCGATTGCTTGGATTATAAGGATCAAACGTCCTC
GTGGAAATTCCAGGTCCTGTGAACCGAGCAATCAGCTATCAAAAAGTGCACAAACAGTGACGACCACACGAGACACAGCG
CTGCCATCCCTCAACAGAACACTTCAGACTGGGTAAAAACGTGAGCCTGGTACACCGAGGCAGGGCTCTCAGGGTGGCCT
CTAGTTTTTGGCATGATGGTCTTTGGTCCTCCTAGAGGAGAAGTTAATGTATTTTAGCACTGGCAAAGAGATTTCCCCTC
TCCCGTTTATTCACCGGTTGTAGCCCTTCTTTATCTGTCAGTGCGTACCTATGTGCGTAAAAAACAGACAAACAAACAAA
AAAACACCACCTGTTGAGGACGTCACAGAGTGGACTCAGAAAGAAAAACACACCACAGCCACGGAAGTAAAAGAACAAAA
CTCAAGTTAATAGTCCTGCTGAAGTGCTCGGGATGGACAGACCTTCTTAAAGCTTCTTAAACAACTTTGCCGCCCTGCCG
GCAGAGTGTGTGACACGAGGATGGCGTGTGGACATGGATGCACTACTTTATTTAAGAAAAAAAAGTGTTTATAAGGAATC
AATATGTAGTTTCTAAGAGACAATCAGTGTGCGTCTTATATAAATGGTACATATGTGGTTTCTTTTTCTTTCTTTTTTTA
TCTGTGCTAGCCTTCGAAACTGTGATCTGTTGTATTGTATGCAATTTGTGAGCCCCCCCTCCCCCTCGCATTGGACTCTC
TGCTGTGATTTTATTAGATTTCTAACTTTTTCGTTTTCTTTCGTTTTTGTTTCTTTTGGGGTTTTTTTCACCAACGAAAG
ATGCTAATGGTTATTTTTACTGCATCACAAAGAGAGACGAGACTTTCCAAGCACATGGTGGATGGTAGTAATAATCAAGG
GTTAGCCATACTGGAAAAGACTCTCGGCTGCTGAGAGCTCTACACTTGCTTCCCCTCCATTGATCTCAACACACGGTGAT
TGTGGATCCTTTACTGGCTCCAAAGATGGTGTGACCTCACCGCTGAAAAGACATGAATAAAGGTCCTGTGAGCTTACTCT
TTCATCAATAGACGATCTGTGTGTGCGTGTGCGTGTTGGAAATTAAAGTGGAACCCTGGCAATGTGCGCAAAAATCATGG
TTGTTTAAGGGGGGGGTTCTTCGTTTTCTACGACTTTAAGACCTAAAAATGGAACAGAACCTTTGTGGGTACTTTTTTTT
TTTTTCAATCGAGGCTGCGGTGGTATATGTGCGTGATGAGGCAAAGA
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or



Organism

GO term(s)

Gene Expression

Gene Structure

Possible Primers

Phylogeny (Gene Tree)

Synteny

Genomic Map Locations

Paralogs

Sequencing Methods

Citations

Sequence

Gene Domains

Molecular Markers


Data input by E. Kaitetzidou
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