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otx2 (Orthodenticle homeobox 2)

Organism
Haplochromis nyererei (Nyereres Viktoriabuntbarsch)
GO term(s)
Molecular Function: GO:0003677, GO:0003700
Cellular Component: GO:0005634
Biological Process: GO:0007275
Paralogs
Sequencing Methods
otx2a: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_005187414.1) annotated using gene prediction method: Gnomon.

otx2b: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_005187411.1) annotated using gene prediction method: Gnomon.
Sequence >XM_013908693.1 Haplochromis (Pundamilia) nyererei otx2a
CCTCAGTCTGGTACGGACAGCTGGGGGTCTCCACTTGGCTTTAAGAGCACTGCCAGTTTAAGAGGACGCCCACTTCTTTA
AACCCGGAGCTCTGCGCACGGAGCGCGTAAAAATTAGCGGACTGATTTCAAGAACTCACATTAAAAGGAAGAGAGAGGGC
GAAAAATGGTTATGTCTCACTTCAGATTCGCCTGGACGACTTGACTCAGTAAACAGAGACGCGACCGGATTTTTAAAAAA
TAAAAACAACCCTCTCTTCTGAGATATTTTTCTGATTTCTTTCCATTGGTGCTCCTTTGACCGACACTCAGCATGATGTC
CTATTTGAAGCAACCGCCCTACACGATGAACGGACTGAGCTTATCTACCTCAGGAGTGGACCTGCTGCATCCTTCCGTGG
GATACCAAGCAACCCCCCGCAAACAGAGAAGGGAGAGGACGACCTTCACTCGGGCCCAGCTCGACGTGCTGGAGAATCTG
TTCGCCAAGACTCGGTACCCGGACATCTTCATGAGAGAGGAGGTGGCCTTAAAGATCAACCTGCCTGAATCCAGAGTGCA
AGTGTGGTTTAAAAACCGACGGGCCAAACATCGCCAGCAGGCCCAGCAAACCCAGACTGGCGTGCAGAACAAGGCTGTCA
GCAGGCCGGTGAAAAAGAAAGGCTCGCCAGTCCGAGAGGCCAGCTCAGAGAGCGGAGCCAGCGGCCAGTTCACGCCGCCT
TCGAGCACATCAGTCCCGGCTGTGAGCAGCAGTGCTGCTCCCGTGTCCATCTGGAGCCCTGCTTCCATCTCCCCGCTCTC
AGACCCACTGTCTACCTCCTCCTCCTCCTGCATGCAGCGCTCGTACCCCATGACTTACACCCAGGCGACGGGCTACAACC
AGGGTTACACGGGCTCCTCATCCTACTTCACGGGGATGGACTGCAGCTCCTACCTTTCGCCCATGCACCACCAGCTCTCC
GCCGCAGGCTCTGCCATGAGCCCCATGAGCAGCAACGGGGTGTCTAGCCACCTGAGCCCGGCGTCGTCCCTCTCCTCCTC
GGCGTATGGAGCAGCGGGGCTCGGGTTCAGTGGCTCTGCAGACTGCCTGGACTACAAGGACCAAACAGCCTCCTCGTGGA
AGCTCAATTTCAACGCGGACTGTCTGGATTACAAAGACCAATCAGCGTGGAAATTCCAAGTGTTGTGAGGGGTACGAAAT
AAATGGACAGCTGTCGTTAACTGCAGACTGTACAGGCAAATTAAAGCCCAAGGTTTGGAGAGGCAAGTGTGGCGTTTCCC
CCCCTCACACACCACCACGACCACAGGCCCTAACTTCTACCTCGGGGCAAAGCATAGACGAGGACTGGCGGGCGGCTGTC
TCGCGTGTAGGGCTAACTTATTAAAAATACACTGACTTCTTAACTTTGATCAAGGGAACAGAACAGATTTGTTAACCAAA
AGTGAGGAAAAGGATCAAGAGATCGAAAGATCCGAATCCTAACTTGGTTGAGTTTGAGGGACATGGTCATGTTTTCTCCT
TAGCTACTTAAAGACTCCCTTCTTGTCTTTTTTTTGTTTTGTTTTGTTTTTATTATTAATTTTGCTGGATCGCTGAAGAG
CCCCTTTGATGAAAACGCTGCGCAGGAGAACGTGTGCTTGCGCTGTGAGTGAGTGAGAGCAGCTCTGAACATGAACCTGG
ATGCACTATTTAATTTATGAGAAAATATGTGGAAGTTACGAGACAATCAGTCCATGTGCGTGTGAGCATAAAATCCCTGA
TGTGTTTATTTTGCCCTTGTGTCTGTATTTTTTTTTTGTACAACCTGTATGCAATTGCGCTTTGCGCAAAACCCGTGTGC
CACGAGCCAGCTGTGAATTTGATAGTTTTTTTAATGTCTCGGGTGTTGTTGATAAATTATTATAAGGAGATATTAGTTAA
AATAGGGAGTGCACGATGAA
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>XM_005724035.1 Haplochromis (Pundamilia) nyererei otx2b
CAGAGACAGACCTCAGCTCAGTCCTGCGGCTCCCATTGGCTGGCACTTTGTACAAAATCTAACTCAAACCACTTCACTCA
CAACACACCAACAAATCCTAAAGGCGTACATGCAGCCTCCCTCCTTCACTCCGCCGCTGTCGCAACGCTTCAGAACCTCA
TGTAGGCGCTCAACGCTTAACTTTTATCTCCAGTGAAGACGGCTGCTCCTGCTCTGCTCGGGTTTGTGATATTCTCCTTT
TATGCGACAGGACGTCGTCGATTTCTACTGACTTTTATTATTTCTCCCGGAGGACACCAAGTAGACAAAGAATTTTCCAG
TCATCCCTGCCAAGGTGCCAGGTGTAATACGGACCACACGGCGAACAGAGGACACCGAATACTCCTCGGGAGCTCCATCA
ATTTTCAAAATTTTCTCCAACTTCAGCACTCAGACAAACATTAGCATGATGTCGTATCTAAAGCAACCACCTTACACAGT
TAATGGCCTCAGCTTAACTACTTCCGGCATGGATCTTTTACATCCATCAGTGGGCTATCCAGCCACTCCACGGAAGCAGA
GGCGAGAACGGACTACTTTTACGCGCGCACAGCTCGACGTTTTGGAGGCTCTATTTGCTAAAACTCGGTATCCTGATATA
TTCATGCGCGAAGAGGTAGCGCTGAAAATCAATCTACCTGAATCCCGGGTACAGGTCTGGTTTAAAAACCGGCGGGCAAA
GTGTCGCCAGCAGCAGCAGCAGCAGCAGAATGGGGGGCAGAACAAAGTGCGACCTGCCAAAAAGAAAAGTTCCCCAACCA
GAGAAGTGAGCTCGGAAAGCGGGGCCAGCGGCCAGTTCACACCCCCCACCAGCACCACCACGGTCCCCGCCATCTCTACC
AGCACCGCGCCAGTGTCCATATGGAGTCCGGCGTCCATTTCTCCCCTCTCAGATCCCTTATCTACCTCCTCCTCTTGCAT
GCAGAGGTCTTATCCTATGACCTACACACAGGCCTCGGGCTACAGCCAGGGCTACGCCGGGTCGACGTCCTACTTCGGGG
GTATGGACTGCGGCTCTTACCTCACTCCCATGCACCACCAGTTGTCAGGCCCGGGGTCAACTCTCAGTCCGATGAGCACA
AACGCAGTCACAAGCCATCTGAACCAGTCCCCGGCGTCCCTCTCCACCCAGGGATACGGGACGTCCGGCCTGGGCTTCAA
CTCCACAGCAGACTGCTTGGATTATAAGGACCAAGCGGCATCGTGGAAGCTGAACTTCAATGCCGATTGCTTGGATTATA
AGGATCAAACGTCCTCGTGGAAATTCCAGGTCCTGTGAACCGAGCAATCAGCTATCAAAAAGTGCACAAACAGTGACGAT
CACACGAGACACAGCGCTGCCATCCCTCAACAGAACACTTCAGACTGGGTAAAAACGTGAGCCTGGTACACCGAGGCAGG
GCTCTCAGGGGGGCCTCTAGTTTTTGGCATGATGGTCTTTGGTCCTCCTAGAGGAGAAGTTAATGTATTTTAGCACTGGC
AAAGAGATTTCCCCTCTCCCGTTTATTCACCGGTTGTAGCCCTTCTTTATCTGTCAGTGCGTACCTATGTGCGTAAAAAA
ACAGACAAACAAACAAAAAAACACCACCTGTTGAGGACGTCACAGAGTGGACTCAGAAAGAAAAGCACACCACAGCCACG
GAAGTAAAAGAACAAAACTCAAGTTAATAGTCCTGCTGAAGTGCTCGGGATGGACAAACCTTCTTAAAGCTTCTTAAACA
ACTTTGCCGCCCTGCCGGCAGAGTGTGTGACACGAGGATGGCGTGTGGACATGGATGCACTACTTTATTTAAGAAAAAAA
AGTGTTTATAAGGAATCAATATGTAGTTTCTAAGAGACAATCAGTGTGCGTCTTATATAAATGGTACATATGTGGTTTCT
TTTTTTTTTTTATCTGTGCTAGCCTTCGAAACTGTGATCTGTTGTATTGTATGCAATTTGTGAGCCCCC
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Organism

GO term(s)

Gene Expression

Gene Structure

Possible Primers

Phylogeny (Gene Tree)

Synteny

Genomic Map Locations

Paralogs

Sequencing Methods

Citations

Sequence

Gene Domains

Molecular Markers


Data input by E. Kaitetzidou
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