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otx5 (Orthodenticle homeobox homolog 5)

Organism
Poecilia formosa (Amazon molly)
GO term(s)
Molecular Function: GO:0003677, GO:0043565, GO:00037000
Cellular Component: GO:0005634
Biological Process: GO:0032922
Paralogs
Sequencing Methods
otx5a: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006800018.1) annotated using gene prediction method: Gnomon.

otx5b: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006800396.1) annotated using gene prediction method: Gnomon.
Sequence >XM_007556460.1 Poecilia formosa otx5a
AACCTCAGAGCCGCGACGCGTCGGAGGCGCAGAGGGATCCCAGGGGCCACTTCACCTGCGCGGTGCCTGTCAGTCCGGAT
GCTCTGCGCTCCCTTCCGTCCTCCGCTGCTGAGCCCATTCTCGGCTCAAAGGGCGCTTTAAAAAAAAAAAAAAAAAAAAA
GGAAAAACAGAAATCCCTGTTCACGTTTCTCCTGCGCGTCCCCGCGTCGCTTAGCGCGCGGATCCCGGCAGACGCGCCGA
CCGGGTTGCGCTCCGAGGGTCCCACAGCTGCCGCGCTGCGCTTCCGACCTCCAAGTCAGCGACAGGACTTGACAAAGCTG
CCGGAAGGATGATGTCCTACATAAAACAACCTCATTACACCATGAACGGGTTAAACCTGCCCGGTCCCGGGATGGACGTG
CTCCACACCACAGTCGCTTATCCCCCCACTCCGCGGAAGCAGCGCCGGGAGCGCACCACCTTCACTCGGACACAGCTGGA
CATCCTGGAAGCGCTGTTCTCCAAGACCCGGTACCCGGACATCTTCATGCGGGAGGAGGTGGCCCTGAAGATCAACCTGC
CCGAGTCCCGGGTGCAGGTGTGGTTTAAGAACCGCCGTGCCAAATGCCGCCAGCAGCAGCAGCAGAGCAGTGGCCAGTCC
AAGCCTCGGCCTCCAAAGAAAAAAGCCTCACCAGCGCAGGAGCCCAGTGCTCCCAACCCAGTCCCCAACCCGTCTGGTTC
CTACAGCCCCTCCTCGGCTCAGTCCGCCGGGCCCAGTCTGGCCCCCAGCTCCAGCACAGGAAACACGGCCGTGTCCATCT
GGAGCCCGGCCATCTCCCCCCTGCCCGACCCGCTGGCCTCCTCCGCCCCCTGCATGCAGCGACCCTCGCCATACCCCATG
AGCTATGGCCAGCCCTCGGCCTACACCCAGGGCTACGCCAGCACCACCTCCTACTTCACGGGCCTGGACTGCAGTGCCTA
CCTGTCCCCCATGCACTCGCAGCTGTCGGGCACCGGGGGCGCGCTCAGCCCCATCACCGTCCCCTCCATGGGGGGCTCTC
TGAGCCAGTCCCCGGCCTCGCTGTCCTCGCAGGGCTACAGTACCGCCTCCTCCCTGGGCTTCACCTCCGTGGACTGCCTG
GACTACAAGGACCAGCAGGCCTGGAAACTGGGCTTCACTACCATGGACTGCCTGGACCACAAGGACCAGAACTCCTGGAA
GTTCCAGGTCCTCTAGGAGGCGAGGAGGGGCGTCCCTTCATGAATGTGTGTGTGGAAGTGTGTGACTTAGTCCAGCATGA
GAGGGCAGGTTTCTGCTGTTTCCTGTTTGTTAGGCTGTTTGTTGTTTGTTTGTTTTTTTCGTCTGAGTGTGAACAGGAAC
GGACAGAACTGGAAGCCCTTCCGGGAAAAACAGAGTGTCTTTAGTCAGAGGCTTCTTCAAATTCACTGTAACACAGACTG
CTACAGGAGATATCTCCTGCCAACAGCCATCAACATCTGCAGTGACTCTGAAGAGTTTGAATTAATATGATTTACAACAT
TTAATTTCCCCTCTGGGATCAATTAAGTATTTTTGAATTGAGTCTTTGAACAGTCGGTCCTCCTCATGTTCATATACAAC
CTACGACCTTTGACAGACTTGCAGGGTTAAAGGTCACACGCTGTGTGTTTTAAACTCGCATTGTGATGAAGGAACTGTAG
GCTGCACCTCCTTTAAGGTTTTTCTCAACTATTTATTATTACTATCGTTATTTTATGCTACGTTTAGCTCTGTCGTTTGC
TTTTATTTATTTTTGGGGCATTTATGTTTATCAGTGTTGGTGTCTAGTGTTTCAGTCTGTTCCATAGGATAAAACAAATG
TTCTGTTTTAGCTGTGTTGATGTATTAAAGTGGTTTATTCTTTA
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or

>XM_007577834.1 Poecilia formosa otx5b
AGAGAGAGAGAAAGACAGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAGAGACACCCCCTGGAGAATAGTTCAGAGA
GCCGGCCCCCGGCCCAAGAGAAGGAGAGAGAGTGAGGGAGTGAGGGAGTGTTTTAAAGCCGGCAGGAGGCATGATGTCCT
ACATTAAGCAGCCCCATTACGCCGTGAACGGGTTAACGCTGTCCAGCCCGGGCATGGATCTGCTACACACCGCAGCCGTG
GGATACCCCAGTACGCCACGAAAGCAGCGTCGGGAACGCACCACCTTTACGCGTGCGCAGCTGGACATCCTGGAGGCTCT
GTTTGCCAAAACGCGATACCCAGACATCTTCATGAGGGAGGAGGTGGCTCTCAAGATCAACCTGCCTGAGTCTAGAGTTC
AGGTCTGGTTTAAAAACCGCCGTGCCAAATGCCGCCAGCAGCAGCAGCAGAGCACCGGCCAATCCAAACCCAGGCCTCCT
AAGAAGAAGGCTTCGCCGACCAGAGAGGCGCCCACGGAGGCCAGTGCCAACCCAACCAATGGACCCTACAGCCCTCCGCC
CCCTCCTCCAGGCACAGCCATCACCCCCAGCTCCAGCTCCGCCAGTGCCACCGTCTCCATCTGGAGCCCGGCCTCCATCT
CCCCGCTGCCGGACCCGCTGTCATCCTCCACCACCCCCTGCATGCAGCGCACCACCACCTACCCCATGACCTACACCCAG
GCCCCGGCCTACAGCCAGAGCTACGCCGGCTCCTCCTCTTACTTCACCGGCCTGGACTGCAGCTCCTACCTGTCCCCCAT
GCACCCGCAGCTGTCGGGCACCGGAGGGGCCCTGAGCCCCATCACGGCCTCCTCGATGGGAGGGCCCCTCAGCCAGTCCC
CCGCCTCGCTGTCCTCGCAGGGCTACACAGCCGCCTCGCTGGGCTTCGGAGCCGTCGACTGTCTAGACTACAAAGACCAA
GCTGCCTGGAAGCTCAATTTCAATGCCGCTGACTGTCTGGACTACAAAGACCAGAATTCCTGGAAGTTCCAGGTCTTGTA
AATAACAGCGGGTTGAAACAGCTGGGGGCAAGGGGGAGGATGAAAATAGGTGGGGAATCAAAAAAAAATGAAGTAGTGTG
AATAACCCCCATATTACTGTTGGTGTTTTAGTAGAAGACAGAAAGCTGGGGACACAGAGACATTAGTGACGTCAGCTGAG
GGACCAATCAACTAAATGTTACAGAAAGGAGAATAAAAGAAGTGTGGAAGTTGA
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Organism

GO term(s)

Gene Expression

Gene Structure

Possible Primers

Phylogeny (Gene Tree)

Synteny

Genomic Map Locations

Paralogs

Sequencing Methods

Citations

Sequence

Gene Domains

Molecular Markers


Data input by E. Kaitetzidou
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