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CTSD (Cathepsin D)

Organism
Oreochromis niloticus (Tilapia)
Phylogeny
Genomic Map Locations
CTSD-a
On-LG5

CTSD-b
ON-LG4
Paralogs
CTSD-a,
Citations
  • fish-it.org.
    		•
    Sequence >Oreochromis Niloticus CathepsinD-a ENSONIT00000019617
    ATGAGGACCTTATTCCTGTTTGTCATCGCAGCGCTAGCCTTGACTAACGACGCCTTGGTGCGAATTCCGTTAAAGAAATT
    CCGTTCCATCAGACGTGAATTGACCGACTCGGGGAAAGGAATCGAGGAGCTCGTGGCTGACAAACACTCCCTTAAGTACA
    ACTTTGGCTTCCCCTCGAGTAACGGACCCACTCCAGAAACCCTTAAGAACTACCTTGATGCCCAGTATTATGGCGAGATT
    ACCCTGGGAACCCCTCCTCAGAAGTTTACTGTGGTGTTTGACACCGGTTCCTCCAACCTATGGGTGCCCTCCGTTCACTG
    CTCTTTCTTTGACATAGCATGCTGGCTTCACCACAAATATAATTCTGCAAAATCCAGCACATATGTGAAGAATGGCACTT
    CCTTTGCCATACAGTATGGATCTGGCAGTTTGTCAGGCTACCTCAGTCAGGATACATGCAGTATTGGAGACATATCAGTA
    GAAAAACAGATCTTTGGAGAGGCCATCAAGCAACCCGGCGTCGCTTTCATCGCAGCAAAGTTTGACGGGATCCTCGGCAT
    GGCCTACCCGAGCATCTCCGTGGATGGGGTGGTCCCGGTGTTTGATAACATGATGAACCAGAAGAAGGTGGAGAAGAACG
    TCTTCTCCTTCTACCTGAACAGGAACCCTGACACAGAACCTGGTGGTGAGCTGCTCCTGGGAGGGACCGACCCCAAATAC
    TACGACGGTGACTTCCACTATGCCAACATCAGCCGGCAGGCCTACTGGCAGGTCCACATGGATGGGATGACAGTTGGCAG
    CCAGCTGAGTCTGTGCAAGGGCGGCTGTGAGGCCATCGTAGACACTGGGACCTCTTTAATCACTGGCCCTGCTGCCGAGG
    TCAAGGCCCTGCAGAAGGCCATCGGAGCCATCCCGCTCATCCAGGGAGAGTACTTGGTGAACTGCAGTAAGATCCCATCG
    CTGCCTGTCATCACCTTCAACGTAGGCGGACAGAGCTACACTCTGACTGGAGAGCAGTATGTCCTCCAGGAGAGTCAGGC
    TGGGAAGACTATTTGTCTAAGTGGCTTCATGGGATTGGACATCCCTCCACCTGCCGGGCCCCTGTGGATTCTGGGAGACG
    TTTTCATCGGCCAATACTACACAGTCTTTGACCGTGACAACAACAGGGTGGGCTTTGCTAAATCCAAATGA
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    >XM_013270128.1 Oreochromis niloticus cathepsin D-b
    GGACGAAGCCGAGTGAGAGCGGATGTTATCGAAGTACTTTCACTCAGCTTTAGTACGTCAGTTGAAGTAGACGGTTCCGC
    ATTTCTGTGTCCGTTAGTCTCGGTAATTAAGCGGACTTTTACTCTGGAGGTCAGAAATGAGTCGACTGCAGATACTTTGT
    GTGGCCGGGGTGCTGCTGCTAGCACAATGCACCGCCATCCTGAGAGTTCCTCTTTATAAAACAAGGAGCCTGCGCCGCCT
    GATGAGCGATAATGGGATGTCCGTGGATGAACTGCGGGCTTTGGCGAAGAGCACCGGATCACCGGACAGCGCTCCATCCC
    CACAGCTGCCCGTGGAAAGGCTGACCAACTTCTTGGATTCTCAGTACTATGGGATTATAAGTATTGGCACCCCACCACAG
    AACTTCACTGTGCTGTTTGACACTGGCTCCTCCAACCTGTGGGTCCCCTCCATTCACTGCTCCTTGTTGGATATTGCCTG
    CTGGTTTCATCACCGCTACAACTCAAAGAAGTCGAGCACATATGCCAAGAATGGCACAGAGTTCTCCATCCAGTATGGCA
    CGGGCAGCTTGTCTGGCTTCATCAGCGGGGACACTGTCACTATTGCAGGTCTGTCTGTGCCTGGGCAGCAGTTTGGAGAA
    GCGGTGAAGCAGCCCGGGATTACGTTTGCCTTTGCGCGATTCGATGGGGTGCTGGGGATGGGCTACCCCTCAATATCTGT
    AGATAATGTCATGCCAGTGTTTGACACGGCCATGGCTGCCAAGCTACTCCCCCAGAACATTTTCTCTTTCTACATTAGCA
    GAGACCCGACCGCAGCAGTAGGAGGGGAGCTGATGCTGGGAGGGACCGACCCGCAGTACTACACTGGAGACCTGCACTAT
    GTTAATGTGACACGAAAGGCCTTCTGGCAGATTGGGATGAACAGAGTTGATGTTGGCAACCAGCTGACTCTTTGCAAAGC
    CGGTTGCCAGGCTATCGTTGACACAGGGACGTCCCTAATTGTGGGTCCTAAGGAGGAAGTCAAGGCACTGCAGAAAGCCA
    TTGGAGCGATCCCCCTGCTCATGGGAGAGGCCTTGATCGAGTGTACGAAGATTCCAACTCTCCCCGTTATCTCTTTCGAC
    ATTGGAGGAAAGACGTTCAACTTGACCGGAGAGGATTATGTCGTGAAGGAGTCTCAGATGGGTGTGACTATCTGTCTGTC
    AGGCTTTATGGCCATGGATATCCCGCCTCCTACAGGACCCCTCTGGATCCTGGGAGATGTATTCATTGGGAAGTACTACA
    CAGTGTTCGACAGGGATGCTGATCGCGTGGGCTTCGCCACTGCCAAGTAGACAATTAAACATTGTGTAAGATATACTGCA
    CTTCTCCTTTTTAGCAGTAATTTCACTTTAAAAGTCCCGCAAAGCAAAATTTAATCGACAGTCTCGCTTTATTTGATTTG
    CAGTTATATCTGACATTTGCATGCAGAAATGAGATTTACATGAATCACCAAATGATTTGCAGTGAGCTGATAGGGATGCT
    ACATTAATTACCACAAAGGAGTGATGTGAACAAAGGGACTACTACAACCCATTTCTTGCATTTGTCTGTTTAAATACTTT
    TGATTTTTTTTAGCTTTAACATATATTTTATAGAATACTATGCAAAGCTGTGCATTTTGATGTCTTTGGATGGTTTAAAT
    GTGTGATTTAAAGTGTGTGACACCTTTTGTACACAAAAAGCACACTTATATGAACAAATGTACTGGGCTACCTACACATT
    ACTGCTACAGAAGCGGCTGGAAATCCATGCCATGAAGCTCCCAACATATGATTTTGGAGCCGATGTTAACGCCAGCAGAG
    GTTTGGACCTCTACAGTTACGGAGCCAGGAGAGCATTGGAAACTTCAGTGCTATCAGTGACCCCGTCCTATAATTTTATA
    TGGTTTGACACTTTGTGGCTTGTTTTCTGTAGCATCTAAACGCTTCCACTTTGCAATACCGCTTATAACTGATTGTAGAA
    TATTTAGGAGGAAAGAAATTCCCCAGGCTGACTTGTTGCAATGGTAGCCATCCTATTACAGCACCATGCTTTAAGGTGGG
    GCCCAGTACTGTTGCCCATACAGTGTATGAGGATTTTTGTAACATGCATTTTTTTAATTTGATTACTGACTTTTGACAAA
    ATAAAACTTTAGAATAAATAAA
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    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by Elena Sarropoulou
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