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CTSD (Cathepsin D)

Organism
Danio rerio (Zebrafish)
Phylogeny
Genomic Map Locations
CTSD-a
Dr-Chr.18

CTSD-b
Dr-Chr.3
Paralogs
Citations
  • fish-it.org.
  • Solchenberger B, Russell C, Kremmer E, Haass C, Schmid B. Granulin knock out zebrafish lack frontotemporal lobar degeneration and neuronal ceroid lipofuscinosis pathology. PLoS One. 2015 Mar 18;10(3):e0118956. doi: 10.1371/journal.pone.0118956. eCollection 2015. PubMed PMID: 25785851; PubMed Central PMCID: PMC4365039.
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    Sequence >DR CathepsinD-a NM_131710.2
    ATGAGAATCGCCTTTTTGCTGCTCGTTGTTGCCTTTTTCTGCACGTCCGACGCGATTGTCCGGATACCACTAAAGAAGTT
    TCGAACCCTCAGACGAACACTAAGTGACTCTGGCAGATCATTAGAGGAGCTTGTGTCTAGTTCTAATTCCCTGAAATACA
    ACCTGGGCTTCCCAGCTAGTAATGATCCTACTCCAGAAACACTCAAAAACTACCTAGATGCTCAGTATTATGGCGAGATC
    GGTCTTGGCACTCCTGTCCAGACCTTCACTGTGGTGTTTGACACTGGATCCTCCAACCTGTGGGTACCTTCAGTCCACTG
    TTCCCTGACTGACATCGCCTGCTTGCTTCATCACAAGTACAATGGGGGCAAATCAAGCACCTATGTGAAGAATGGGACTC
    AATTTGCCATCCAGTATGGATCAGGAAGTTTGTCCGGGTATCTCAGCCAGGACACCTGCACGATTGGAGATATTGCAGTT
    GAAAAGCAGATATTTGGAGAAGCTATCAAGCAGCCAGGAGTGGCCTTCATTGCTGCCAAGTTTGACGGTATTCTCGGGAT
    GGCCTATCCTCGCATCGCTGTCGATGGGGTTCCTCCTGTTTTCGACATGATGATGAGCCAGAAGAAAGTGGAGAAAAATG
    TTTTCTCTTTCTATCTTAACAGAAACCCTGACACTCAGCCTGGTGGTGAGCTGCTACTGGGAGGAACAGACCCCAAATAT
    TACACTGGAGATTTCAACTATGTGGACATCAGCAGACAGGCCTATTGGCAGATTCACATGGATGGCATGAGCATCGGCAG
    TGGACTATCTCTGTGTAAAGGAGGATGTGAAGCCATTGTGGACACTGGGACGTCTCTGATCACTGGCCCAGCTGCTGAAG
    TCAAAGCCCTGCAGAAGGCTATTGGAGCCATCCCTCTGATGCAGGGAGAGTACATGGTAGACTGTAAGAAAGTGCCGACG
    CTCCCCACCATCTCCTTCTCCCTGGGTGGAAAGGTCTACTCGCTGACTGGAGAACAGTACATACTCAAGGAAAGCCAGGG
    TGGACACGACATCTGCCTGAGTGGATTCATGGGTCTGGATATCCCACCGCCTGCCGGACCGCTGTGGATTCTGGGTGATG
    TTTTCATTGGCCAGTACTACACTGTGTTTGACAGGGAGAATAACAGAGTGGGCTTCGCTAAGGCCAAATCAGTCTAA
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    		or

    >DR CathepsinD-b BC154324.1
    ATGAACGGCTTTCACCTATTCGCGTTTTTAATAGGGCTGTTAATTGCGGACAGCCAAGCAATAATCAGAATTCCTCTGCA
    CAAGATGCGTACTGTGCGCCGCATGTTGGCAGACAATGGCAAGACTATCGATGAGATCAAATCTCTGGCTAAAATGAAGG
    CGAAATATTCTGATGGCACATTTACCAATCAAGGCTCCGTCACAATACCAGCACCAACAACAACACAAATCCCACCACCT
    GTGGAGAAACTCACCAACTTCATGGATGCCCAGTATTATGGCATGATCAGTATTGGTACGCCTCCTCAGGACTTCAGTGT
    GCTGTTTGACACCGGATCATCAAACCTCTGGGTTCCATCTATCCATTGCGCCTTCCTGGACATAGCATGCTGGTTGCACC
    GTCGCTATAACTCTAAGAAGTCAAGCACGTACGTTCAGAATGGCACTGAGTTCTCCATCCAGTATGGCAGAGGGAGTCTT
    TCTGGCTTCATCAGTCAGGATACAGTCAATTTGGCAGGGCTGAATGTGACAGGCCAGCAGTTTGCAGAGGCGGTAAAACA
    GCCTGGGATTGTGTTCGCGGTGGCACGCTTTGATGGAGTCCTGGGCATGGCGTACCCCGCCATTTCTGTAGATAGGGTCA
    CGCCTGTGTTTGACACAGCCATGGCTGCCAAAATCTTGCCCCAGAATATCTTCTCTTTCTATATCAACCGGGACCCGGCC
    GGTGATGTTGGAGGCGAGCTGATGCTGGGAGGTTTTGACCAGCAGTATTTCAACGGCGATCTGCATTATGTCAACGTCAC
    GCGAAAAGCTTACTGGCAGATTAAAATGGATGAAGTCCAGGTTGGTTCCACTCTTACCCTTTGCAAAAGTGGATGCCAGG
    CTATTGTTGATACTGGAACATCAATGATCACGGGGCCCGTTCAGGAGGTGCGGGCACTGCAGAAAGCCATCGGAGCCATT
    CCACTGCTCATGGGGGAGTACTGGATCGACTGTAAGAAGATTCCTACACTTCCTGTTGTTTCCTTTAGCCTTGGAGGAAA
    GATGTTCAACTTAACTGGACAGGAGTATGTCATGAAGGTGAGTCACATGGGTATGAATGTTTGTCTGTCGGGCTTCATGG
    CGATGGATATCCCTCCTCCTGCTGGGCCGCTGTGGATTCTGGGAGACGTGTTCATCGGCCGCTACTACACTGTGTTCGAC
    AGGGATCAGGACCGTGTAGGCTTCGCTCCAGCTAAATGA
    Send to
    		or



    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by Elena Sarropoulou
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