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THRa (Thyroid Hormone Receptor alpha)

Organism
Oryzias latipes (Medaka)
GO term(s)
Molecular Function: GO: 0003677, GO:0003700, GO: 0003707
Cellular Component: GO: 0005634
Biological Process: GO: 0006355
Genomic Map Locations
thraa
Chr 8

thrab
Chr 19
Paralogs
Sequencing Methods
thraa: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004087970.1) annotated using gene prediction method: Gnomon.

thrab: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB114860.1.
Citations
Sequence >XM_011478645.1 Oryzias latipes thraa
GGGCGGGATTGGTCAAAAATTCAGCAGGCGCGGGCGGGAGCGGGATGAAGAAAATAGTCCCGCGCAGGGCTCTAGTTGGA
AACTCTCAGACACTGGGTGAAATAAAGCAGAACTTATCAGTTTAGTAGATGGGTTTTGATGACGTCAGGATGTCCTGTTT
ATGTTCCATTCTTGGTCATAGCTCTGTGTGCAGGTGCTTTATTCAGGCACCTGTGGTAACACTCACCCCCCCTTTCCCCT
CATTTTTACCATGCCTTCCTCTCTTCCTCTCCAACATTTTCCATCTCACCCTCACTGCCTGCACTCCTCACTCCTTATCT
CCTCCTCCTCCTCCTCCTCCTCACAAAACCCTGTCTTCCTCTTCAACATCTTCCTCCTGTCCTCTAGCTCTTAGCATCTC
TGTTCCAGGGTACATCCCCAGTTACCTGGAGAAAGATGAGCCATGTGTGGTGTGTGGAGACAAGGCCACCGGGTACCACT
ACCGCTGCATCACCTGTGAAGGTTGCAAGGGATTTTTCCGCCGGACAATCCAGAAGAATCTCCACCCATCTTACTCCTGT
AAATATGACGGCTGCTGCATCATCGACAAGATCACTCGCAACCAATGCCAGCTGTGCAGATTCAAGAAGTGCATCAGCGT
GGGCATGGCCATGGACTTGGTGTTGGATGAGAGCAAGCGCGTGGCCAAGCGGCGCCTGATAGAGGAGAACCGAGAGCGCA
GGAAGAGGGAGGAGATGGTGCGGACGCTGCAGATGAGACCGGAGCCGGACAGTGCGGAGTGGGAGCTCATCAGGATGGTG
ACGGAGGCGCACCGGCACACCAACGCCCAGGGGTCCTGCTGGAAACAGAAACGCAAGTTCCTGCCGGACGACATTGGTCA
GGGTCCAATGGCGCCCACCGCAGATGGAGATAAGGTTGACATTGAGGCCTTCAGTGAATTCACCAAGATCATGACCCCTG
CCATTACCCGAGTTGTTGACTTTGCCAAGAAACTGCCCATGTTTTCAGGGCTGCCTTGTGAAGATCAGATCATCCTGCTG
AAAGGCTGCTGCATGGAGATCATGTCCCTGCGCGCTGCCGTTCGCTACGATCCAGAAAGCGAGACGCTGACTCTCAGCGG
CGAGATGGCGGTGAAGCGCGAGCAGCTAAAGAACGGGGGCCTGGGGGTTGTGTCGGACGCCATCTTTGATTTGGGCAAGA
GTCTGGCACAGTTCAACCTGGATGACTCGGAAGTGGCGCTGATGCAGGCTGTGCTGCTCATGAGCTCGGACCGTTCAGGG
CTGACCAGTGTGGAGAAAATCGAACAGTGTCAAGAAGCGTACCTGCTGGCGTTTGAGCACTACATTAACTACCGTAAGCA
CAACATTCCCCACTTCTGGCCCAAACTGCTGATGAAGGTGACGGACCTGCGCATGATCGGCGCCTGCCATGCCAGCCGCT
TCCTCCACATGAAGGTGGAGTGCCCCAACGAACTCTTCCCTCCGCTCTTCTTAGAAGTATTTGAAGACCAGGAAGTGTGA
CCAACACCTTCTGGGACCGGAGGGGGATTCTGGGTGATGGACAACAAAGTTTGACTTTTGTTAGCATCAGTTGGAACACG
CCCTTCAAACTTTTGTTTGTTTGTTTGTTTGTTTTTTTCTGACAAACCAACGACCAATAGTCCACCACCAGCGAACACTC
ATCCTTGTGCTGCAACAGAAACAAAATCTAGTTAAAAAAACCAATCACAGGTACAGTATTTCTATATGCAAACACAAATC
TCCTCATGCAAATGGACAGGGCTTCATTTGAGTAGTTGCTCATCTGCCTGCCACCTCCGAAAACTGGCTTCTTGTTGTTT
TTGTCCTTCTTTCTGTGCTTGTTTGACTCTCAACCATCCCTCCAGATGTTTCCCCTCCTTAGTTTCTCCTAAACCCATGA
GCACACAAAAACCTTCCTTTAGTTTGTTTGTCGTGTGCACACAGACACACCAATCCATCCGCTGCACTGTTACCTCAGGC
CTCCCTGGAAATCTTTCCATATTTATTTCTTGGGTTTTTAGAAAAGATGAAGACTATTATTTGTAAATAGATGTTTTATA
GCTTCAGTGATAGGACACCGTTATTGTCTTTCTAAGGGTGCAAGATGTCATGAACGTCAAAGTGCGTTCTACAGTTAGTG
TTTAAAGAGAGAAGTTGCAACACATTTTCATGACACAATAGCATGTATGTACGCATAGATAGGTTTCCATTAAACAGATC
CTAATAGGAAATCAATGGTAAACAGTCAAAGAAGAAAGAAACACTCATTAGTTTTCAAATTCTCACAGTTTTTAATGTTT
AGACTTTTTCCAAACAGAAATCGTGTTACTTTGGTGATGCTTTACTTGCCCCTTTTAGACATAGAAGTGTTGGAGAAAAA
AACGTTTTTGTTATAACGATGTTTTGCTTTGTGAACTTAAATTAAGCACTGTAAAAAATAGTTTCTGTAATTCCACTGTG
GGGGTCAGATTCTCATTTGGAACCAAGACATATGCTGGTTCTTGATCATAAGAGTCACCACCAGCTCTGGATCAGATCCT
GACAGCTAAATATGTTTCATATCACACGTACGCAGACACTAAACTATATTGAACTCTCTGGCCAAACATCCACGGCTCCC
GTGGACACCGTTGCTGCTAACTGAAAAGCAACAGAAAAACGAACGTTTGGAGTCTTTCTTGTCCATCAGTTTCCTGTTTA
CTTGAGGTGCTGCAGCAGAATCCCGTTTGTGTTGATGAGCCCCACACGGCACCCTGTCGATCAGGAACCTGACCATTTTT
TTAAGGAGGCTTTGCATAGGCGTGACCTCAGGGAGCTGACCTCTCAGCCTCCATTTAGCAGGAATAGAAGCGTATTTAAA
CATGAATCCTCACTTTGCTGTGATGTGTTGCTCGGTAAATAGGAGGACCCCGATGTGGCAGACAAATTAACTGCTTGATG
ATGTCACCCTCGTACTCGTGCATCTCAAACGTTTGGTCAAAATTCAAGCTAATGTTTTTTTTGGGGGGAAATAGCAGCAA
AAGGTTGCAGCTACAAAATCAAAAGATGCTGCTTCCCCTGAGTCTCAGTTTGCGGTGATTACCCTGAACAGCTCTGTGGT
CCTTCCTCTTCCTTCAGCCTTTTCACAGAAAGCACTTTTGTGTCCAAAACTAAGACGAATCTTTCACACCTGTGTACACG
TAGCTGGAATACCTCTCCGACACGTACCTCCTGCGTCATTACCTCA
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>NM_001104705.1 Oryzias latipes thrab
ATGGAACACATGCCCAAGGAGCAGGACTCTAACTCTAACCCATCAGAGGGCGAAGAAAAACAGTGGCTCAATGGCCCTAA
AAGGAAGAGGAAGAACAGCCAATGTTCAGTGAAGAGCATGACTGGGTATATTCCCAGCTACCTCGAAAAGGATGAGCCAT
GTGTGGTGTGTGGTGACAAGGCCACTGGTTACCACTACCGCTGCATTACCTGTGAGGGCTGCAAGGGTTTCTTTCGTAGG
ACCATTCAGAAGAGCCTCCACCCGTCCTACTCCTGTAAGTACGATGGCTGCTGCATCATCGACAAGATCACTCGCAACCA
GTGTCAGCTGTGCCGCTTCAAGAAGTGCATCGATGTGGGAATGGCGATGGACTTGGTGTTGGACGACTCAAAGCGAGTGG
CTAAACGCCGCCTGATTGAGGAGAACAGGGAGAAACGCAAAAAGGAGGAGATGGTGAAATCCCTCCAGACCCGTCCAGAA
CCTACCGTGGACGAGTGGGACCTGATCCGCATGGTGACTGAGGCACATCGAAACACCAATGCTCAGGGCGCGCAGTGGAA
ACAAAAGCGTAAATTCCTGCCTGAGAAAATTGGCCAGTCTCCTGTTGCCCCCACATCAGACGGAGACAAGGTGGATCTGG
AAGCCTTCAGTGAGTTCACCAAAATCATCACCCCTGCCATCACCCGTGTTGTGGACTTTGCCAAAAAACTGCCCATGTTT
TCTGAGCTGCCTTGTGAAGACCAGATCATCCTGTTGAAGGGTTGCTGCATGGAGATCATGTCGCTGCGGGCTGCCATACG
CTACGACCCAGAGAGCGAAACATTGACGCTGAGTGGGGAGATGGCTGTGAAGCGCGAGCAGCTGAAGAACGGCGGGCTCG
GCGTGGTGTCTGACGCCATCTTTGATTTGGGCAAGAGCTTGGCGCAGTTCAACCTGGACGACACAGAGGTGGCGCTGCTC
CAGGCTGTGCTTTTAATGAGCTCAGACCGCTCAGGCCTGACCTGTGTGGACAAAATCGAGAAGTGCCAGGAGACCTACCT
GCTGGCATTTGAGCACTACATCAACTACCGCAAGCACAACATTCCTCACTTCTGGCCGAAGCTCCTGATGAAGGTGACGG
ACCTCCGGATGATCGGCGCGTGCCACGCCAGCCGCTTCCTCCACATGAAGGTGGAGTGCCCCAACGAACTCTTCCCCCCA
CTCTTCCTCGAGGTTTTCGAGGACCAGGAGGTGTGA
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Organism

GO term(s)

Gene Expression

Gene Structure

Possible Primers

Phylogeny (Gene Tree)

Synteny

Genomic Map Locations

Paralogs

Sequencing Methods

Citations

Sequence

Gene Domains

Molecular Markers


Data input by Elisavet Kaitetzidou
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