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GAPDH (Glyceraldehyde-3-phospate dehydrogenase)

Organism
Ictalurus punctatus (Channel catfish)
GO term(s)
Molecular Function: GO:0004365
Cellular Component: GO:0097452
Biological Process: n/a
Paralogs
GAPDH-1,
GAPDH-2
Citations
  • Small BC, Murdock CA, Bilodeau-Bourgeois AL, Peterson BC, Waldbieser GC. (2008). Stability of reference genes for real-time PCR analyses in channel catfish (Ictalurus punctatus) tissues under varying physiological conditions. Comp Biochem Physiol B Biochem Mol Biol. Nov;151(3):296-304. doi: 10.1016/j.cbpb.2008.07.010. Epub 2008 Jul 22. PubMed PMID: 18692590..
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    Sequence
    >I. punctatus
    ATGGTTAAAGTCGGCATCAATGGATTTGGCCGTATTGGGCGTCTTGTGACCCGTGCTGCCTTCACCTCCAAAAAGGTG
    GAGGTTGTGGCCATCAATGACCCCTTCATTGATCTGGATTACATGGTGTACATGTTCAAGTATGACTCCACCCATGGAAG
    GTATAAGGGAGAGGTCAAGGCTGAGGGTGGCAAACTGATCATTGATGGACATGCTATCACAGTTTTCAGCGAGAGGGACC
    CAACTAACATTAAGTGGGGTGATGCTGGTGCTGAGTATGTTGTGGAATCCACTGGTGTGTTCACCACCAATGAGAAGGCC
    TCTGCTCACTTGAAAGGTGGTGCCAAGAGAGCCATCATCTCTGCCCCCAGTGCTGATGCCCCAATGTTTGTCATGGGTGT
    CAACCATGAGAAATATGACAAATCCCTTAAAGTAGTCAGCAATGCTTCCTGCACTACCAACTGCCTGGCTCCTCTGGCCA
    AAGTCATCAATGATAACTTTGTCATCATTGAGGGTCTTATGAGCACTGTCCATGCCATCACAGCAACCCAAAAGACAGTT
    GATGGTCCTTCTGGTAAACTGTGGCGAGATGGTCGTGGTGCCAGCCAGAACATTATCCCAGCCTCTACTGGTGCTGCCAA
    GGCTGTGGGGAAAGTCATTCCTGAGCTTAATGGCAAGCTGACTGGTATGGCTTTCCGTGTCCCAACTCCCAATGTGTCAG
    TGGTTGACTTGACTGTCCGTTTGGAGAAGCCTGCCAAGTATGATGACATTAAGAAGGTGGTTAAGGCTGCAGCTGAGGGC
    CCCATGAAGGGTATTCTGGGGTACACAGAACACCAGGTGGTATCCACAGACTTCAATGGAGATACTCATTCATCCATCTT
    TGATGCTGGTGCTGGGATTGCCCTTAATGATCACTTTGTTAAGCTGGTGACCTGGTATGACAACGAGTTTGGCTACAGCA
    ACCGTGTCTGTGACCTGATGGCCTACATGGCATCCAAGGAGTAA
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    >I. punctatus
    ATGTCGAACTTTTGCGTCGGAATCAACGGATTTGGCCGCATCGGCCGCCTGGTCCTCAGGGCCTGCCTGCAGAAAGGA
    ATTAAAGTCTCGGCCATCAACGACCCCTTCATTGACCTGCAGTACATGGTCTACATGTTCAAGTACGACTCCACTCACGG
    ACGCTACAAGGGAGAGGTGCACATGGAGGACGGCAAGCTCGTCGTCGACGGCCAGAGTATCTCCGTTTTCCAGTGCATGA
    AGCCCGCTGAGATCCCGTGGGGCGACGCCGGCGCGCTGTACGTCGTCGAGTCCACCGGAGTCTTCCTCAGCATCGAGAAA
    GCCTCTTCTCACTTGCAGGGCGGAGCCAAGCGCGTGGTAGTCTCCGCCCCCTCCCCCGATGCCCCCATGTTTGTGATGGG
    AGTCAACGAGGATAAGTACGACCCCTCCAGCATGACCATCGTCAGCAATGCATCCTGCACGACTAACTGCTTGGCTCCCT
    TGGCCAAAGTCATCCATGACAGCTTCGGTATCGAGGAGGCCCTCATGACAACAGTCCATGCCTACACTGCCACCCAGAAG
    ACGGTGGACGGTCCCTCCGCCAAGGCCTGGCGCGACGGCCGCGGCGCTCACCAGAACATCATCCCTGCTTCCACAGGAGC
    TGCCAAGGCCGTGGGCAAAGTCATCCCAGAACTCAACGGGAAGCTGACTGGCATGGCGTTCCGCGTCCCTGTGGCCGACG
    TCTCCGTCGTGGATCTCACCTGCCGCCTCTCGACCCCCGCAAGCTACTCTGACATCAAGGAGGCCGTCAAGAAGGCTTCC
    CATGGATCTCTGAAGGGAATTCTGGGATACACTGAGGACTCTGTCGTGTCCTCTGACTTCATCGGTGACACCCACTCCTC
    CATCTTTGATGCCGGTGCCGGAATTTCCCTGAACGACAACTTTGTCAAGCTCATTTCCTGGTATGATAACGAGTTTGGTT
    ACAGCCACCGCGTCGCCGACCTCTTACTGTACATGCACTCCAAGGAGTAG
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    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

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    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

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    Data input by Elena Sarropoulou
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