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otx2 (Homeobox Protein otx2)

Organism
Salmo salar (Atlantic salmon)
Phylogeny
Paralogs
otx2-a,
Sequencing Methods
otx2-a: Illumina sequencing, TSA database

otx2-b: Illumina sequencing, TSA database
Citations
  • Heather D. Veilleux, Lynne Van Herwerden, Nicholas J. Cole, Emily K. Don, Christian De Santis, Danielle L. Dixson, Amelia S. Wenger, Philip L. Munday. (2013). Biology Open 2:907-915. doi:10.1242/​bio.20135496.
  • fish-it.org.
    		•
    Sequence >GBHC01011108.1 Salmo salar otx2-a
    ATGATGTCTTATCTGAAGCAGCCACCTTATACAGTCAACGGCCTGAGTTTGTCTGCTTCCGGGATGGACCTACTTCATCC
    GTCTGTCGGCTATCCAGCCACCCCTCGTAAACAGAGGCGCGAGAGGACGACCTTTACGCGTGCTCAGCTGGACATTCTGG
    AGAACTTGTTCGCCAAGACGCGCTACCCAGACATCTTCATGCGCGAGGAGGTGGCCCTGAAGATCAACCTACCTGAATCT
    CGTGTTCAGGTATGGTTTAAAAACCGAAGGGCGAAGTGTCGCCAGCAGGCACAGCAGTCACAGAGCGGCGCACAGAGCAA
    GACCAGACCCGTCAAGAAGAAAAGTTCCCCCATCAGAGAAGCCAGCTCCGAGAGCGGTGCCAGCGGCCAGTTCACACCGC
    CCCCCAGCACCTCAATTCCCGCCGTGAGCAGCAGCAGTGCCCCGGTGTCCATCTGGAGCCCGGCCTCCATCTCTCCTCTC
    TCTGACCCACTCTCTACCTCTTCCTCCTCTTGTATGCAACGGTCGTACCCGATGACCTACACCCAGGCGTCCGGATACAG
    CCAAGGCTACACCGGATCCTCATCGTATTTCAGCGGGATGGACTGCGGGATCTTACTTGGCGCCTATGCACCACCAGCTC
    TCCACGGCGGGCTCCACAATGAGCCCCATGGGCAGCAACGGGGTATCCAGCCACCTGAGCCCGCCTTCGTCCCTCTCCAC
    GCCAGGGTATGGGGCAGCGGGACTGAGCTTCAGTGGTCCCACAGACTGCCTGGATTACAAGGACCAGGCCGCGGCCTGGA
    AACTCAACTTCAACGCTGA
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    		or

    >GBRB01022568.1 Salmo salar Homeobox Protein otx2-b
    CACACACACACACACACACAGTCAATAGTGAATCCATATTTAGTTCATTGATAAATGTGGGGGTCTGATCTCAGGACCTT
    TATTTATGTCTGTTCAGCGGTGGGGTCACACCATTTTTGGAGCCATGTTAGGGATCCACAATCAACGTGAGTGATCAATG
    GATAGGGACGCGCTAGGCTGTCCAGAGAGGTCTCAGCAATCGAGTTTCTTTTCCAGTATCCCCTCAGATGTTCTACCCTG
    TGTTTGGACAGTCAGGTTGTCTCTTGCAATAATCATTATTTAACCATTATCCATTCTTTTCTTGTTGTTCAAAAAGTTAC
    AAATCTATTAAAATCACAGCAGAGAGTCATCGCTGATGCGAGGGAGCTCACAAATTGCATACAATACAACAGATCACAGT
    TTCGAAGGCTAGCACAGATTTAAAAAACAAACACATATGTACCATTTATATAAGACACACACTGATTGTCTCTTAGAAAC
    TACATTTTGATTCCTTATAAACACTTTTTCTTAAATAAAGTAGTCAATCCGTGTCGCCTTGGGGGAGCGCAGTCCACACA
    ACATTCCTGGTCAAAGTGTTCCTCCGCCAATAGGTCGGCAAGTTGTAAGAGGCTTAAATGAAGCCTGTCCATCCCAAGCA
    CTTAACCAAAAGATTGGCTCCTCTAGCAATGTTGTTCTTGGGTAAGGATTTGTTCGTGGCTGTGATGTACCATAAGTTAC
    TACGAGTCGACTCCAAGTTTTCCTTCAATTAACCAACAGGTGCTGTACTGTTAGCATAGAGGTACACACTGACAGACAGA
    TGAGATGGCTTCAACCTGTGAGGTTAATGAAAATAAAATATCTTTGCCAGTGCTAAAATAAATTATAACTTCTCCTCTGC
    TGGACAGGGCCAAACTTCATGCCAACAACACGAGCCGCTACCGAGAGTCGCCCCCCCTCTCTCTTTCTCTCTCGAAGTTC
    CTTACCGGCGACACGAATAATCAGTCTTTTACGGATATATCTTATTGAAGGATGGCAGGGCTATATGTTTGATTTATCAT
    CATTATCTTCGTTTGAATAGTTTACATAGCCATATTGTTCTTTTCACAGGACTTGGAATTTCCACGATGAAGTCTGATCT
    TTATAATCCAAGCAATCGGCATTGAAGTTCAGCTTCCAGGATGCCGCTTGGTCTTTATAATCCAAGCAGTCTGCCGTGGA
    GTTGAAGCCTAGCCCCGAGGCTCCGTAGCCCTGAGTGGAGAGGGATGCAGGGGACTGGTTCAGATGGCTTGTGACGGCGT
    TGGTGCTCATAGGACTGAGTGTCGTCCCGGGGCCAGACAACTGGTGGTGCATGGGTGTAAGGTAAGAACCGCAGTCCATT
    CCGCCGAAGTATGACGTTGATCCGGCATAGCCTTGGCTGTATCCCGAGGCCTGTGTGTAGGTCATTGGGTAGGATCTTTG
    CATGCAGGAGGAGGATGTAGAAAGAGGGTCAGCCAGTGGAGAGATGGAAGCTGGACTCCAAATAGATACCGGTGCGGTGC
    TGGTAGATATGGAAGGGACTGAAGTAGTACTTGAGGGCGGTGTGAACTGGCCACTCGCCCCGCTCTCAGAGCTCGCTTCT
    CTGGCTGGAGAACTCTTCTTTTTGGCTGGTCGCACTTTGTTCTGCCCCCCGTTCTGCTGCTGCTGTTGTTGCTGGCGACA
    CTTTGCCCTTCGGTTCTTAAACCAAACCTGTACACGAGACTCTGGCAGATTGATTTTCAGTGCTACCTCCTCGCGCATGA
    ATATATCAGGATATCGAGTTTTGCCGAACAGTGCCTCTAAAACGTCAAGTTGGGCGCGTGTGAAAGTCGTCCTTTCTCGT
    CTCTGCTTGCGGGGCGTCGCTGGGTAGCCCACGGATGGATGCAGAAGGTCCATTCCGGAGGTCGTTAAGCTCAGTCCATT
    GACTGTGTAAGGTGGTTGCTTGAGATACGACATCATGCTAATGTTGGACTGGGGGGTAAAGTTGGAGAAAATGTTGAAAA
    CTGGGTAAGGCCCGTAGATGTCCTTGGTTGTTTATTGGTTCTTTTTCTCGAGGTCTCGACTTTGCCGCTGAATGCTCTCG
    ATGGTGGGCCGGAGTAGAATGTTCTTTGTCCAGTTCTTTCCTTGAATAAAATAGCTCTCTCGAAATCCTGTAATGTAAAC
    AATCAAAAGTAACTGTCGCTTTGGATATATTCGAATAAAAATACCGACACAACTTTCATCTTCAACACTTGCACCAATGT
    ATGGGATAGTGCAAAAGCGTTTATGATGGTAAAATACATGCGGTTATGATTTGTTAGTCTGTTCTGGGGAAGTTGCTGGA
    GTTGGATTTGTAGAGAGGGCTGGCCAATGAGAACGTCTGGAGGACTCGAAGCTGGGTCTGTCTCTCTCTCTCGCGGGGAG
    ATTTGCTGAGAAGCAAATGTCGCCAGCTACGCTTTGACGC
    Send to
    		or



    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by M.Iliopoulou E.Sarropoulou
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