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Sox 19 (SRY (sex determining region Y)-box 19)

Organism

Danio rerio (Zebrafish)

Sox 19a,
AB242331.1

Sox 19b
AB242332.1

Okuda Y., Yoda H., Uchikawa M., Furutani-Seiki M., Takeda H., Kondoh,H., Kamachi Y. (2006). Comparative genomic and expression analysis of group B1 sox genes in zebrafish indicates their diversification during vertebrate evolution. Developmental Dynamics 235(3):811-825. doi:10.1002/dvdy.20678.

Vriz S., Lovell-Badge R. (1995). The zebrafish Zf-Sox 19 protein: a novel member of the Sox family which reveals highly conserved motifs outside of the DNA-binding domain. Gene 153(2):275-276. doi:10.1016/0378-1119(94)00815-A.

Data input by Mara Iliopoulou

>AB242331.1 Danio rerio Sox 19a
GGACGCACAGCGAGCTCAACTCGGACCTCTTTCGCTTTTAGGTAAACTAACGTCACTTCAGAACTTGTTGCTTGTGTTCA
GGCGTTTACAAGCACCTCTGCTTTTAGTTACAGACGGCTCGCTCTCGTTTTGGACGCACGTGTTCGCGAAACGTTTAGCG
TCAGTGGATTTGATTTTAAGCTATTTTCTAGTTTTACGGTGATACTCCGGTATCACCACTAACTTCTGTTGGCAGCCATG
TACAGCATGCTGGAGCACGACATGAAGTCCGCCGTGCCACCGACGCACCAGAGCGCGCAGGGAATGACCCAGCTGAACGG
TGGAGTGACCCACGGATCCGCCAAACCGGCTGTCAACAGCCAACAACAGCAGAGTAGCGATCCTATGGACAAAGTTAAGA
GGCCCATGAACGCATTTATGGTGTGGTCTCGGGGTCAGAGGCGCAAAATGGCACAGGAGAACCCCAAAATGCACAACTCT
GAAATCAGCAAGCGCCTGGGCGCCGAGTGGAAGCTGTTGACGGACGCGGAAAAACGACCCTTTATTGATGAAGCCAAGCG
GCTTCGCGCGCTGCACATGAAGGAGTACCCAGATTACAAATACAAACCCCGTCGTAAGACGAAGCCCGTGCTGAAAAAGG
ACAACCCGGCTGCTAAGTATCCTCTGTCAGCCGGTAACTTACTGGCGGCTGCCGCGGCTCAGGGGTCAGGTGGAAGCCCG
AGGATGGACAGCTACGGCTGGGGTCACACCGGTGGTTACCCTGGCATGCAGACCGATGCGCTGGGTTACAGTCAGCAGCT
GCATCGCTACGATCTGTCCGCCTTGCAGTATCCATCCGCCATGGCCACCGCACAGACCTACATGAATGGTGCCAACTCCT
ACAACCCCATGTCCTATAGCAGCACTCCACAGCAGCCCAGCCCAGTCATGTCCATGGTGAAACCAGAGCAGGTGTCTCAT
TCTCCCACTGGAGCCCACAGCCACCAGCGGGGTCCTTTACAAGGAGACCTGAGGGACATGATTAGCATGTATATCCCTGG
AGGAGACACCACAGACAGTGGAGCACAGAGAGGCTACTCCAACATTCAACAGCATTACCTCACCGGTACGGCGCCTCTCA
CACACATCTGATCAGGAAACTTTCTTTACCTTCCTGTTTCGGGTCTGGAGAGCCACCGATGTCGGGTGAAGATGCGTGAA
CATTAACTTGATGCTGTAAAAAAGGATGAGGGTGTGTGGACACATGGTTGAACTGGAAAACCCAAGGCAGCTGGACTTCT
GGCCTTGTTGAAGTGCCTCAGAATATATTGTGTGGAATGTGTGTCACCCCTTTCTATCAGTTTTTTTTAAGGTCCATGTC
TTTGTTTTCTGTTTAGCATTCAATGATTTTGTCATTGAGGCCCGGTGCACTGTTGGAACTGCTTGTAGTAGTGAAGTGAC
ACTTTTTCTGTAATAAACTAGCCGTTGGGTTGAGCCAACCAGTTGACTGGTTGAACAGCTTATTATTTGCATGGTAAACC
AGCTAGTTTAATATCTCACTGATTTCAAAGGCATGGCTGTGAACGCTATAAAGGTAAAGAAGGGAATGGAGCACACATTC
CCTCAGTCGCTGCTTGTCCTGATGATCTAAACACCTCAAAATGAATCTCCCAACCTTTAAGCTTTCGTACCATAAGACTC
TGTAACATTGTGCTGCTCTTCATTGTTTAGGTAAATGCAAAAATTGAAATGCACAACGGTTTAGACATTTTTGTTAGTGT
AGGTTCATGTATGCCATGAGGTTCAACAGATTTTTGTTGCATTAAAAGTGAAAAATGAAATAGAGATCCCGCTTAGAGGG
ATTTGACTGTATTTTCTATTAAAAAAAGATCCATTAATTCTCAACTGCTCTGAGAAATAGAACATTGTGAATAGAAGAGT
TGTGTAAAAAGGGGAGTCAAAACGTTTTGAATAATGTTCATTAAAAAAGAAACCTTTATGAGCTTGTTAAAAGACTGTTT
GACTAAGAATGTATTGTTGTGAAATGTTTTTTTATTATTATTTTACTTTTACGCCCTTATAGTAAGGGTTAATAATCTTG
TTTGTGACTTGACAACCTTGACAGAAAAACCACAAAAAAATGTAATAAAGTATTTTATTATTTTTGT

>AB242332.1 Danio rerio Sox 19b
CTTGTCTAGAGTTCAACACAGACACAAACAAGCTGTGATTCCTTTCGCGCTCTTTTCTACTTTATTTTGCTTTAGTAACT
TTTCTAAATGCTTTGAGATTTCCCTCATTGCTGCTGCTTTTATTTGTGGTGCTTTCTTCAGCCAGACAATCAAAAGTCTT
CACCTGCGCCGGATTTGTTTGACCTGATTAGGCTCGCTCGTGCACTTTTAATTGGCTGCTTTAGCATTGCGCGGTTGAAA
CTCAAAGCGAGAAGTGGCATGATGTACAGCATGATGGAGCACGAGCTGAAGACCGCGGGTCCACCCCACACCCTCCAGCA
CAGCCCGGGCATGTCTCCTCCGGGCAGCGGGGTGGGAAACGCGCACCACGTTTCGAAAACCGCTTGTCCGCCAGGCGTGG
ACCCGATGGACAAAGTCAAGCGGCCCATGAACGCGTTTATGGTCTGGTCTCGGGGTCAGAGGAGGAAGATGGCCCAGGAG
AACCCTAAAATGCACAACTCTGAGATCAGCAAACGGCTCGGCGCGGAGTGGAAACTTTTAACGGACGTGGAGAAGCGGCC
GTTCATCGACGAGGCCAAGCGGCTGCGGGCGGTGCACATGAAGGAGTACCCCGACTACAAATATAAGCCCCGGCGCAAGA
CCAAAGCTCTCATGAAGAAGGACAATTCTGTCGGCAAATATCCTCTTGCAGCGGGCAACTTGTTGGCATCGGCTGTGGCG
CAGGGACAAGGTGGCAGCCCGAGGATGGACGGCTACGGCTGGGGTCACGCCGGTGGGTACATGGGCATGCAGGGGGACGC
GCTCGGATACCCGCAGCAACTTCACCGGTACGATCTGTCAGCTCTGCAGTACCCGGCGGCACAGCCCTACATGAACAGCG
CCAGCTCTTACAGTCAAATGTCCTACAGCAGCAGTCCTCAGCAGCCCAGTCCGGTGATGTCCATGGTTAAACCAGAACCC
CTGTCGCATTCACCCACTGGAGTACCAAACCACCACCGTGGTGCTTTCCAAGGGGACCTGAGGGACATGATTAGCATGTA
CATTCCAGGCGGTGATACCAGCGAAAGCTCAAACCAGAGGGCTTACCCTGGTGTCCAACAGCACTATCTTGGTGGAACTG
TTCCCCTCACTCACATCTGAAGTTTAGGGAAATTTTTCCCTGAACTGCTATTAGTTGGATCCTTATTGGGACCGTAGTGC
CACTCATAGACCGTGTGGATTACTGAACACTTCTGATTGTTTACTACCTCCTCGCTTTGAATGATCTGAAGTTCTGTGTT
GAAACTGTATAGAAAATTTTACCATTTCAGTCTTCTGTGTTTTGACCGGGGACCTTTCATTTTCTAACTTCTCCTGAAAT
TAGGATAATTCAGTCAGCCTTTTTTCCTCCAAGTTCCAGTTCAGACATCCTCTTCCTAAATTCATATGTTTTTTTTAATT
ATTATAATTATAAACAGTGTTCTTTTGTGCTTCATGCAATGTTTAGAACATGCGTTGTTCATGCAGCAGTGGGCAATCAT
GATCCAAAACCTAATTGGGGTACAAAACAGGGCGACTCTGAAAACAGGTCAACCAATAATAATCACAATGGCCAGTAATA
GACATACCATGTGACCTCTAGTGTAAATTAGTTTTTGTTTTGTGAATCCTGCTATTATACCCAAACTGGCTAAGCGCACT
GAATAACTGAGTGTTTGGTCAAGTTGACCTTTGTTTCTTTAGGTTTGGGTATTGATGTATAGCGAAGTGTTTTGGACAAT
CTCAGGGCCTCCTTCAAATAAATAGTGAGAAGATGACGGTATAGATTGCCTTTATTGAATGGGTTCATAATAGTGAGGAG
AAAAAGTCATTATACTTTTCCTACTTTTAAATAATATCTGATTTTCACATGTATCAAACTTGTTTGTGAACTAATCTTTT
TGTTTCTAGTCTTTACAAGGTAATTGCACTCCTGTAAATGGTCAGTTTTTGGCCATGCAGATTGCTAAATGTTGAGTTTT
TCTAGTTCCAGCATTTCCCTCTTAAGGGCTAAACTCGAATGCACTGATCTTCGCTGTCAGTCAATGCACTTCGTTAGACT
AGAAGGGTTTCTACCTCCTCTGGTCTTTCTCATTCTGCCACAGCATTAAGTCTGCTGCTACCATTACAGTATGGTTGACC
AGTGAGTTCAGTGGACTTGACTGAAATTTTCTTTTCACAGTGTGACCTTTTGTCAACAAAATGCAAAGTCATGTCAAGGT
TAGTTTTGAACTCCTGCAGGTGGCATTTTTGTGGCTGTCAGAAATTAAATTTGACTTTTTTTTATTTTATTTTTTATTTT
TTGCTGCCACAAAATTCGTTCAGTTAGATACTAATGTTTTTGTTAATTGAATGGTGATTTAAGCACAATGGGGGAAAAAA
AAGTTTACATTACCATTGAAGTGAGTTTGCAGCTTGCTGTTTATTTTTTTTTTCTTTAATAATTTTAATCTAGGTTGTAA
ATACCCTTTTTGTACAGTGTATATTGGTTTTGTGGCTCTTATAAGGGCCGTTTTACAGAATAAAAAATGACAACGC

GO term(s)

Gene Expression

Gene Structure

Possible Primers

Phylogeny (Gene Tree)

Synteny

Genomic Map Locations

Sequencing Methods

Gene Domains

Molecular Markers

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