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GAPDH (Glyceraldehyde-3-phospate dehydrogenase)

Organism
Oreochromis niloticus (Tilapia)
GO term(s)
Molecular Function: GO:0004365
Cellular Component: GO:0097452
Biological Process: n/a
Phylogeny
Paralogs
Sequencing Methods
GADPH-1: Predicted only

GAPDH-2: Not available
Citations
  • Wang E, Wang K, Chen D, Wang J, He Y, Long B, Yang L, Yang Q, Geng Y, Huang X, Ouyang P, Lai W.(2015). Evaluation and Selection of Appropriate Reference Genes for Real-Time Quantitative PCR Analysis of Gene Expression in Nile Tilapia (Oreochromis niloticus) during Vaccination and Infection. Int J Mol Sci. 2015 Apr 30;16(5):9998-10015. doi: 10.3390/ijms16059998. PubMed PMID: 25941937; PubMed Central PMCID: PMC4463629.
  • Tsai MA, Wang PC, Cao TT, Liao PC, Liaw LL, Chen SC. (2013). Immunoprotection of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from Lactococcus garvieae against Lactococcosis in tilapia. J Gen Appl Microbiol.59(6):437-49. PubMed PMID: 24492602.
  • Trung Cao T, Tsai MA, Yang CD, Wang PC, Kuo TY, Gabriel Chen HC, Chen SC.(2014) Vaccine efficacy of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from Edwardsiella ictaluri against E. tarda in tilapia. J Gen Appl Microbiol. 60(6):241-50. doi: 10.2323/jgam.60.241. PubMed PMID: 25742975 .
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    Sequence >XM_005455438.1 Oreochromis niloticus Glyceraldehyde-3-phospate dehydrogenase-1
    AGCTTAACTTTGCTCTTCCCCACTCACATCCGGAGTCCCAAGACAGACAGAGGCCCCTCACAAACGAGGACTAAACCAAC
    CCAGGCAAAATGGTGAAAGTCGGTATCAATGGATTCGGCCGCATCGGTCGTCTGGTGACCCGTGCTGGTTTCCACTCCAA
    GAAGGTGGAGATTGTCGCTATCAATGACCCCTTCATCGACCTGGAGTACATGGTCTACATGTTCAAGTATGACTCCACCC
    ACGGCCGCTACAAAGGCGAAGTGAAGGCTGAGGGAGACAAGCTGGTCATCGATGGACACAAAATCACTGTTTTCCATGAG
    AGGGACCCCGCCAATATTAAATGGGGTGAGGCTGGTGCAGAGTATGTGGTGGAGTCCACTGGTGTGTTTACAACAATTGA
    GAAGGCCTCCACTCACTTGAAGGGTGGTGCCAAGAGAGTCATCATCTCTGCACCCAGCGCTGACGCTCCCATGTTTGTCA
    TGGGTGTCAACCACGAGAAGTATGACAACTCCCTCAAGGTTGTCAGCAATGCTTCCTGCACAACCAACTGCCTGGCACCT
    CTGGCCAAGGTCATCAATGACAACTTTGGCATCATTGAGGGCCTGATGAGCACAGTTCACGCCATCACTGCCACCCAGAA
    GACCGTGGATGGTCCCTCTGGCAAGCTGTGGAGGGATGGCCGTGGCGCCAGCCAGAACATCATCCCTGCTTCTACTGGTG
    CTGCCAAAGCTGTCGGCAAAGTCATCCCTGAGCTCAATGGCAAGCTGACTGGCATGGCCTTCCGTGTCCCCACCCCCAAC
    GTGTCAGTGGTTGACCTGACAGTCCGTCTGGAGAAACCAGCCAAATACGATGACATCAAGAAGGTTGTGAAGGCTGCCGC
    TGAAGGACCCATGAAGGGCATTCTGGGATACACAGAGCACCAGGTCGTGTCCACAGACTTCAACGGTGACTGCCATTCAT
    CCATCTTTGATGCCGGTGCTGGCATTGCCCTCAACGACCACTTTGTCAAGCTGGTCTCATGGTATGACAATGAGTTTGGA
    TACAGCAACCGTGTCTGCGACCTGATGGCCCACATGGCTAGCAAGGAGTAAACTTGGGTGTCGCTGAACTGTCGCATTGC
    CCACATTCTTCTTACTCCTGAGTTACAAATGCACAAAAAGGCATTGTATTCTCTGTGACTCTGGTTTCGTCATGTAGCCA
    TCCCCCATAATACGCCTGAGGAAAGGTCCCACATAGAGCAAAAGATTTAAATTGGAGACCAATGCTTTTTTCCTTTATTT
    TTCTTTTCTATTTTTTCAAATTCCCTGTTCTGTTCTTGGGTTTAATGGAGTAAAGGTGTGAATGTATTTGCTTGTCTGTA
    GTACTAAAGTACTGCAGTGGTGGAATAAAGTCCTTCGTTTGTGAGA
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    		or

    >JN381952.1 Oreochromis niloticus glyceraldehyde-3-phosphate-2
    CGCAGAGTACATGGGGGCACACAACTCAAGAAGCATCATCCGTGAGGTTACTCCGCACTCCCTAAGCAGCAGCCACCATG
    TCAGACCTCTGTGTTGGAATCAATGGATTTGGTCGCATTGGCCGCCTGGTCCTGAGGGCTTGCCTTCAGAAGGGCATCAA
    GGTTGTGGCCATCAATGACCCCTTCATTGACCTGCAGTACATGGTTTACATGTTCAAGTACGACTCCACCCATGGCCGTT
    ACCGTGGTGAAGTGTCTGCAGATAATGGCAAACTTGTCGTCGATGGCCAAGCCATCTCTGTCTTCCAGTGTATGAAGCCA
    GCTGAAATCCCCTGGGGCAGCTCTGGAGCCAAATATGTTGTTGAGTCCACTGGAGTTTTCCTCAGTGTTGAGAAGGCCTC
    TTCTCACATCCAGGGTGGTGCAAAGCGTGTGGTTGTGTCAGCCCCCTCACCCGATGCTCCAATGTTTGTCATGGGAGTTA
    ATGAGGACAAATACGACCCCTCCTCCATGACTATTGTCAGTAATGCCTCCTGCACCACCAACTGCCTGGCCCCCCTGGCC
    AAAGTCATCCACGATAGCTTTGGCATCGAGGAGGCACTCATGACAACAGTCCACGCATACACAGCCACACAGAAGACAGT
    GGATGGTCCCAGTGCCAAGGCCTGGCGTGACGGCCGTGGTGCCCACGCAAACATCATTCCAGCTTCCACTGGTGCTGCCA
    AGGCAGTGGGCAAAGTCATTCCTGAACTCAATGGTAAGCTGACAGGCATGGCATTCAGGGTGCCAGTGGCCGATGTGTCA
    GTGGTGGATCTGACATGCCGTCTCTCCAAGCCTGCTTCATACGCTGAGATTAAGGAAGCCGTCAAGAAGGCCGCCGAGGG
    ACCCTTGAAAGGAGTGCTGGGTTACACCGAGGACCAGGTGGTGTCCTCTGATTTCATCGGTGATACCCATTCCTCCATCT
    TTGATGCTGGTGCTGGCATCTCCCTCAATGACAACTTTGTCAAGCTCATTTCCTGGTATGATAATGAGTACGGCTACAGC
    AACCGCGTTGCCGACCTGCTGCTGTACATGCACTCCAAGGAGTAGGCACTTCCTGTCCACCAAGGAAATCAGGAAAGGGA
    CCACCCCTAATTCATCCTTTACTTCCACCCTTCTCTTTTACACACAAGCCCAACCCATAGTCATAGCATCACAACCATTA
    GCTCTACTACAGTATATGTAGGCAGCAGCAGTGTGTTTGAGTGTTTATGAGTTATTCTGGTTTTGTTTTATTCTTCTTAT
    AATTCCAAGGCGACTGTTTGGTGAAATTTTTGTGTCCGTGTGCCCCTCTCCACCTCCCACTGCCACCTTAGATGTGTCAT
    TATGACTCAGTACTATGGTAACTACTGTATCCATCGCCCTGTTGGTGTGTTTAAAGGCTTTATCACCAGTAAAAGGAGGA
    AGCTGCGAGGCAGAACTATTCCAACTCTGCTGAAGAATAAATATAAGTTGAAAACCAAAAAAAAGAAAAAAAAAAAAAAA
    AAAAAAA
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    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by M.Iliopoulou
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