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PPAR-alpha (Peroxisome proliferator-activated receptor alpha )

Organism
Oryzias latipes (Medaka)
Phylogeny
Genomic Map Locations
PPAR-alpha1
Med_Chr.6

PPAR-alpha2
Med_Chr.23
Paralogs
Sequencing Methods
PPAR-alpha1: Downloaded from Ensembl database

PPAR-alpha2: Sanger sequencing
Citations
  • Kondo H., Misaki R., Watabe S. (2010). Transcriptional activities of medaka Oryzias latipes peroxisome proliferator-activated receptors and their gene expression profiles at different temperatures. Fisheries Science 76(1):167-175. doi:10.1007/s12562-009-0193-y.
  • Fish-it.org
  • Sequence >ENSORLT00000002999 Oryzias latipes PPAR-alpha1
    TCTTCCTCCTCCTCCCTCAATCTTGAGTGTCGGGTGTGTGCTGACCGCGCATCAGGCTACCACTATGGAGTTCATGCCTG
    CGAGGGTTGCAAGGGTTTCTTTAGGCGGACCATCCGCCTGAAGCTAGAGTATGACAAGTGTGAGCGTCGCTGCAAGATCC
    AAAAAAAGAACCGCAACAAGTGCCAATACTGCCGCTTCCAAAAGTGCCTGGCAGTGGGCATGTCCCACAATGCCATTCGA
    TTCGGCAGGATGCCTCAGTCGGAGAAGCTGAAGCTGAAGGCGGAGATGGTGGTAGGTGAGCGAGAGGTGGAGGATCCCCA
    GCTGGCTGATCAGAAAAGCCTGGCCAAGCAGATTTATGACGCCTACCTCAAGAACTTCAACATGACCAAGGCCAAGGCTC
    GGACCGTTCTCACGGGCAAGACCAGCACCCCTCCTTTCGTCATTCACGACATGGAAACGCTGCAGCGGGCAGAGCAGACG
    CTGGTGGCCAAGATGGTGGGCTCTACCGGCGCGCTGAAGGACCGCGAGGCCGAAGTCCGTATTTTCCACTGCTGCCAGTG
    CACGTCGGTGGAGACCGTCACGGAGCTCACCGAGTTCGCCAAATCCGTGCCGGGCTTTGCCGCCCTGGACCTTAACGATC
    AGGTGACTCTTTTGAAGTACGGCGTGTACGAAGCTCTCTTTGCCCTGCTGGCCTCCAGCATGAACAAGGATGGGCTCCTC
    GTGGCGTACGGCTCGGGCTTCATCACCCGGGAGTTCCTGAAAAGCCTGCGCCGACCGTTCAGCGACATGATGGAGCCCAA
    ATTCCAGTTTGCCATGAAGTTTAATGCGCTGGAGCTGGACGACAGCGACCTGGCTTTGTTCGTAGCCACCATCATCTGCT
    GTGGAGACCGGCCTGGCCTGGTGAATGTGGCGCACATCGATGCAATGCAGGAGAACATCGTGAAGGTCCTGCGGCTCCAC
    CTGCTGGGCAACCACCCCGACGACGCCTTCCTGTTCCCCAAGCTGCTGCAGAAACTGGCTGACCTCCGGCAGCTGGTCAC
    GGAGCATGCTCAGCTGGTGCAGGAGATCAAAAAGACAGAGGACACGTCGCTGCACCCGCTGCTACAGGAGATCTACCGAG
    ACATGTACTGA

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    >AB469411.1/ENSORLT00000013917 Oryzias latipes Peroxisome proliferator-activated receptor alpha1
    ATGGCGGCGGAACTGTACAGCCCCCCGTCCCCACTGGGAGATTCCCTCCTGGACAGTCCTCTGTGTGGAGACTTGATCGA
    GGATCTCCGTAAGATCTCTGCGTCGATAGGCGACAACTCGCTGGAATTCGACTTCCCGGAGTGCCAGAGCAACGACTCCG
    GGCCCAAAAGCTCCGTTATGCCGGCTGTAGACCCCTTAACTCCAGCCTCCAGTCCTTCACCAGAGGTGTGTGGAGCGGCC
    CCGGCAGCAGAGGACAGCGTCGGGCCCCTCAGCCTGGAGTGTCGCGTGTGCTCAGACCGAGCTTCAGGGTTCCACTATGG
    CGTGCACGCGTGTGAAGGCTGCAAGGGTTTCTTTAGAAGAACCATCAGGCTGAAGCTGGAGTACAACAAATGTGAACGCA
    ACTGTAAGATCCAGAAGAAGAACCGCAACAAGTGCCAATACTGCAGGTTCAACAAGTGTCTGATTGTGGGGATGTCCCAC
    AACGCCATCCGCTTCGGTCGCATGCCGCATGCAGAGAAGCTGAAGCTGAAGGAGGAAAGCAAGGTGGCAGAAAAGGAAGT
    TGAAAGCTGCATGGAGGGAGACGGTAAGACTCTGGTCAGGCAGATTCACGACGCCTACATGAAGAGCTTCACCATGAACA
    AGGCAAAGGCGCGGCTCATTCTGACCGGAAAGACAAGCGAACCGCCTTTTATTATCCACGACATGGACACGTTTCAGCTA
    GCTGAGAGGACGCTAGCTGCCTACATGGCCCACATGGTAAAAGGTGAGCGTTTGGAGTCAGAAAGCGAGCTTCGGGTTGA
    ACACGTGACTCCAGCCGGGGAGTCTGAGGAGCTCCAGCAGAGGGAGGCCGAAGCCAGACTGTTCCACTGCTGCCAGAGCA
    CGTCGGTGGAGACGGTCACCGAGCTGACGGAGTTCGCCAAGGCCATGCCAGACTTCCAGACCCTGGATTTAAACGATCAG
    GTGACCCTTCTGAAATATGCGGTCCACGAAGCGCTTTTCACCCTTTTGGCGTCCTGTATGAACAAAGATGGTCTCCTAGT
    GGCTCGAGGAAGAGGCTTTATCACACGCGAGTTCCTAAAGAGTCTCCGACGACCGTTTAGCGACATGATGGAGCCAAAGT
    TCCAGTTTGCGACGCGCTTCAACTCAATGGACTTGGACGACAGTGACCTGGCGCTTTTCGTGGCCGCCATCATTTGCTGT
    GGAGACCGTCCAGGTCTGGTGGACATACCGGTGGTGGAGCGGCTGCAGGAGAGCATCATTCAGGCGTTGCGGCACCACCT
    GCTGGCCAATCACCCCGACGACACTTTCCTGTTCCCCCGACTGCTGCAGAAGCTGGCTGACCTCAGGGAGCTCGTCACAG
    AGCACGCGCAGCTCATTCAGGAAATCAAAACACTAGAGGACACATCGCTGCACCCCCTCCTGCAAGAAATATACAAAGAC
    ATGTACTGA

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    Organism

    Phylogeny (Gene Tree)

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence


    Data input by M.Iliopoulou E.Sarropoulou

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