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otx2 (Homeobox Protein otx2)

Organism
Takifugu rubripes (Pufferfish)
Phylogeny
Genomic Map Locations
otx2-a
TN_Chr.14

otx2-b
TN_chr.10
Paralogs
Citations
  • Kimura-Yoshida C., Kitajima K., Oda-Ishii I., Tian E., Suzuki M., Yamamoto,M., Suzuki T., Kobayashi M., Aizawa S., Matsuo I. (2004). Characterization of the pufferfish Otx2 cis-regulators reveals evolutionarily conserved genetic mechanisms for vertebrate head specification. Development 131(1):57-71. doi:10.1242/dev.00877.
  • Heather D. Veilleux, Lynne Van Herwerden, Nicholas J. Cole, Emily K. Don, Christian De Santis, Danielle L. Dixson, Amelia S. Wenger, Philip L. Munday. (2013). Biology Open 2:907-915. doi:10.1242/​bio.20135496.
  • fish-it.org.
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    Sequence >ENSTRUT00000029269 Takifugu rubripes otx2-a
    GTTCATCCGTGCGCGGATCAGCAAGGATTACAATTTTTTTTGGCATTTTTTGGGGGGCTTTTCTTCTCGCCGGCCGTCAG
    CATGATGTCCTATTTGAAGCAGCCGCCGTACACGGTGAACGGACTGAGCTTATCTACCTCCGGAGTGGACCTGCTGCACC
    CTTCAGTGGGATATCAAGGTAAAAAAAGTGATTTAACCGTTTTTTTCATTTTAAAGATAAATTGCGGCTTCGGCGTCGCT
    GCCGGGCTACATACCAGAGATGTAAATAATCGATTTTCCTTCTTCTTATCAGCAACCCCTCGCAAGCAGAGAAGGGAGAG
    GACGACCTTCACTCGGGCCCAGCTCGACGTGCTGGAGAACCTGTTCGGCAAGACTCGCTATCCTGATATCTTCATGAGAG
    AAGAGGTGGCCTTAAAGATCAACCTGCCAGAGTCCCGAGTGCAGGTTTGGTTCAAAAACAGACGGGCCAAGCATCGCCAG
    CAGGCCCAGCAGACCCAGTCCGGAGCGCAGAACAAGGCCGTCGCAAAGCCTCTGAAAAAGAAGTCCTCTCCGGTGAGGGA
    GGTCAGCTCAGAGAGCGGAGCCAGCGGGCAGTTCACCCCGCCTTCCAGCACCTCTCTCCCGCCTGTGAGCAGCAGCGGCG
    GCGGCGGCGGCGGCGGCGGCAGCGCGGCGCCCGTTTCCATCTGGAGCCCCGCGTCCATTTCCCCGCTCTCCGACCCGCTG
    TCTACCTCTTCCTCCTCCTCCTCCTGCATGCAGCGCTCTTACCCAATGACCTACAGCCAAGCGCCGGCCTACAACCAGAG
    CTACACGGGCTCCTCGTCCTACTTCGCCGGGATGGACTGCGGCTCCTACCTTTCGCCCATGCACCACCAGCTGTCCGCCG
    CAGGCTCCACCATGAGCCCCATGGGCAACAACGGGATGTCCAACCACCTGAGCACCGCGTCCTCCCTGTCCTCGTCTGCG
    TACGGGGCTGCGGGGCTGGGATTCAGCGGGGACTGTCTGGACTATAAGGACCAAACGTCCTCGTCGTGGAAGCTCAATTT
    CAACGCCGACTGTTTGGATTACAAAGACCAGGCAGCGTGGAAGTTCCAAGTGTTGTGA
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    >AY303542.1 Takifugu rubripes Homeobox Protein otx2-b
    ATGATGTCGTATCTAAAGCAACCTCCTTACACGGTTAATGGCCTCAGCTTAACGACTTCCGGAATGGATCTTTTGCATCC
    ATCCGTTGGTTACCAAGCAACGCCAAGGAAGCAGAGACGGGAGAGGACTACTTTTACGCGCGCCCAGTTAGACGTTTTGG
    AGGCGCTGTTCGCCAAAACTCGGTATCCGGACATATTCATGCGCGAAGAGGTGGCGCTGAAAATCAACCTGCCGGAGTCG
    CGAGTCCAGGTGTGGTTTAAGAACCGGCGAGCCAAGTGTCGCCAGCAGCAGCAGCAGCAGCAGAACGGGAGCCAGAACAA
    GGTGCGACCAGCCAAAAAGAAAAGTTCCCCGACCCGAGAAGTGAGCTCAGAGAGCGGGGCAAGTGGCCAGTTCACGCCGC
    CTACCAGTACCACCACAGTCCCTGCCATCTCGACCAGCACCGCTCCGGTGTCCATTTGGAGCCCTGCATCCATCTCCCCG
    CTCTCAGACCCCTTGTCTACCTCTTCGTCCTGCATGCAGAGGTCCTATCCTATGACCTACACACAAGCTTCCAGCTACAG
    CCAGGGCTACGCCGGCTCGACGTCCTACTTTGGCGGCATGGACTGCGGCTCCTACCTCGCCCCCATGCACCATCAGCTGT
    CCGGTCCTGGCTCGACTCTCAGTCCGATGAGCACAAACGCCGTCACAAGCCATCTGAACCAGTCCCCGGCGTCCCTCTCC
    ACCCAGGGCTACGGGACGTCCGGCCTGGGCTTCAACTCCACAGCTGACTGCTTGGATTATAAGGACCAGGCGGCGTCCTG
    GAAGCTGAACTTTAATGCCGATTGCTTGGATTATAAGGATCAAACGTCCTCGTGGAAATTCCAGGTCCTGTGA
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    		or



    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by M.Iliopoulou E.Sarropoulou
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