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MyoD (Myoblast determination protein)

Organism
Salmo salar (Atlantic salmon)
Phylogeny
Paralogs
MyoD-1,
AJ557149
MyOD-1a,
AJ618978.1
MyOD-1b,
AJ557150.1
MyOD-1c
DQ317527.1
Sequencing Methods
MyoD-1: Sanger sequencing

MyOD-1a: Not available

MyOD-1b: Sanger sequencing

MyOD-1c: Sanger sequencing
Citations
  • Macqueen DJ, Johnston IA. (2006). A novel salmonid myoD gene is distinctly regulated during development and probably arose by duplication after the genome tetraploidization. FEBS Letters 580(21):4996-5002. doi:10.1016/j.febslet.2006.08.016.
  • Macqueen DJ., Johnston IA. (2008). An update on MyoD evolution in teleosts and a proposed consensus nomenclature to accommodate the tetraploidization of different vertebrate genomes. PLoS ONE 3(2):E1567. doi:10.1371/journal.pone.0001567.
  • Fish-it.org
    		•
    Sequence >AJ557149.1 Salmo salar MyoD-2 at NCBI database. Analysis revealed MyoD-1
    ATGGAGTTGTCGGATATTTCGTTCCCTGTCACCTCTGCTGATGACTTTTATGACGACCCGTGCTTCAACACCAGCGACAT
    GCATTTCTTCGAGGACCTGGACCCCCGGTTAGTCCACGTGGGACTCCTCAAGCCAGACGACCACCATTACAACGAAGACG
    AACACATCAGGGCACCGAGCGGGCACCATCAAGCCGGCAGGTGCCTCCTCTGGGCATGTAAAGCTTGCAAGAGGAAAACC
    ACAAACTCTGACCGGAGGAAGGCTGCTACCATGCGGGAGAGGAGGAGGCTGGGCAAGGTCAACGACGCCTTCGAGAACCT
    GAAGAGATGCACGTCGAACAACCCCAATCAGAGGCTTCCCAAGGTGGAGATCTTGAGAAATGCCATCAGCTACATCGAGT
    CTCTGCAATCTCTGCTCAGGGGCCAGGGCGGCGAGAACTACTACCCTATGTTGGAACACTATAGCGGGGACTCTGACGCA
    TCCAGTCCACAGTCCAACTGCTCTGATGGAATGATGGACTATAATACCCCAACGTGCACGTCCGCAACACGAAGCAACTA
    TTACAGCTCTTATTTCGCCGAAACTCCAAATGCTGGTGCCAGAAGCAACAAGAACGCAGCAGTCATCTCCAGCTTGGATT
    GTCTTTCCAACATCGTGGAGAGAATCTTTACAGACACGTCCGCGTCCACTGTGTTATCAGGCCAGGAGGGTTCCGAGGGT
    AGCCCCTGCTCTCCACAAGAGGGATCTATCCTGAGCGAAACGGGGGCACCCGTGCCGTCACCGACCAACTGCCCACAGCC
    GTCCCATGACCCCATCTACCAAGTGCTATGA
    Send to
    		or

    >AJ618978.1 Salmo salar Myoblast Determination Protein-1a
    ATGGAGTTGCCGGATATTCCTTTCCCTATCACCTCTCCAGATGACTTCTACGACGACCCTTGCTTCAACACCAGCGACAT
    GCATTTCTTTGAGGACCTGGACCCGAGACTCGTTCATGTGGGTCTCCTCAAGCCGGACGACCACCATCACAAAGGGGACG
    AGCACATCCGGGCACCGAGTGGGCACCACCAGGCCGGCAGGTGCCTCCTGTGGGCCTGCAAAGCCTGCAAGAGGAAGACC
    ACCAATGCTGATCGCAGGAAAGCGGCTACCATGCGGGAAAGAAGGCGACTGAGCAAGGTGAACGACGCCTTCGAGACACT
    GAAGAGATGTACGTCCACTAACCCAAACCAGAGGCTGCCCAAAGTAGATATCCTGCGGAATGCCATCAGCTATATTGAGT
    CTCTCCAAGGCCTGCTTCGTGGGGCCGGACAGGAGGGCAACTATTACCCGGTGATGGATCACTATAGCGGGGACTCGGAT
    GCGTCCAGTCCCCGCTCCAACTGCTCAGACGGAATGGTGAGAAACTGAACTGTCAAGAATTACGCAAGAATTACGCAAGA
    ATTACGCATGAATATTTTGATGATATACGAGTGTTTGGTTGACACAAACATTAGCTATTTTCAGTTTACTTATCGGTATC
    ATTGCTCTCTTTTAGATGGATTTCAATGACCCGTCTTGTCCACCAAGACGGAGAAACAAGTATGATAGCATCTACTTCAA
    CGAAACACCAAATGGTAAGTGTTATTTCCAAGTAATCAACACTCATAAACAGCTTCAGAGCTACAGGTTACGATGACCAA
    TTTGTCATAATTTCGGAGTCTGAAATGGAGCACAACTACACGGTCAATGTTTAGTATATTTGACCCAGTATATAAAACCA
    TTTAATTATGAATAAAAAACATTTTCGTTTTGCTATGATGTGGTCACTTTATCTTAATTTATTTGATTAGATTTGATTGT
    CATAATGTTCAAACTAATAGTAAAAACCTGCTACATGTAATAAAAACGTCATATTAATTGTCATATTTTATTTCCAGATT
    CCAGACGCAAGAAGAACTCTGTTATTTCCAGTTTGGACTGCCTATCAAACATCGTGGAGCGCATCACCACGGATACCTCT
    GCCTGTCCCGCTGTTCAGGACGGTTCCGAGGGTAGCAGCCCCTGTTCTCCCGGGGATGGTTCCATAGCGAGTGAGAACGG
    AGCCCCCATCCCGTCCCCGATCAACTGCGTCCCCGCCTTGCATGACCCAAACACCATTTACCAGGTGTTGTGA
    Send to
    		or

    >AJ557150.1 Salmo salar Myoblast Determination Protein-1b
    TCTAACGTTTGTGACAAATACAGAGCCAGGATTACACTCGTTACAGGGCTGGTCTTAGAGTTTGACAGTGAGATGGAGTT
    GTCGGATATTTCGTTCCCTGTCACCTCTGCTGATGACTTTTATGACGACCCGTGCTTCAACACCAGCGACATGCATTTCT
    TCGAGGACCTGGACCCCCGGTTAGTCCACGTGGGACTCCTCAAGCCAGACGACCACCATTACAACGAAGACGAACACATC
    AGGGCACCGAGCGGGCACCATCAAGCCGGCAGGTGCCTCCTCTGGGCATGTAAAGCTTGCAAGAGGAAAACCACAAACTC
    TGACCGGAGGAAGGCTGCTACCATGCGGGAGAGGAGGAGGCTGGGCAAGGTCAACGACGCCTTCGAGAACCTGAAGAGAT
    GCACGTCGAACAACCCCAATCAGAGGCTTCCCAAGGTGGAGATCTTGAGAAATGCCATCAGCTACATCGAGTCTCTGCAA
    TCTCTGCTCAGGGGCCAGGGCGGCGAGAACTACTACCCTATGTTGGAACACTATAGCGGGGACTCTGACGCATCCAGTCC
    ACAGTCCAACTGCTCTGATGGAATGGTGAGTCTTGACATCAGTGTATGGGCATGACCCCACTGGAATCCGGTCGTTTTTA
    TTCAATTAAACCTATTTGCAAGTTTATATAAATACATTTAGTAGGCCTATTCGATTTTATTTTCTTATATTATTTTGGAA
    CTACCAATCGGATATCACGAAATTGTGGAGAAAAAGGGGTAAATAGTACAACAACAAAAAAAATGTACACACTAAGTACA
    CAAAAAGGTGGGATATAGGTATATAGTTTGAGATATTAATGTCATTCAATATCATTCCAAAAGCTGTCAAAACACACAAT
    GTGTTATTTTATTGATCGAATTCTTAGATTGCATTTATTAATGTTTTATCCAGATGGACTATAATACCCCAACGTGCACG
    TCCGCAACACGAAGCAACTATTACAGCTCTTATTTCGCCGAAACTCCAAATGGTAAGTTATTATTTTCAAGTGTTATATT
    ATTGTGACTTGTTAGGCCTGGACCTTTATTATACGGTTACGTTTTATTCAGCAGCTCTCCTTCAGTAGCCTAATGCACAA
    GACCCAAGACAGACATTTTTTGACACAAATGTAGATAATGTTATTAGTTTATATTGTCTCTGACTGATGTTTCCCTTTCA
    CCTCTGTTACAGCCTGGTGCCAGAAGCAACAAGAACGCAGCAGTCATCTCCAGCTTGGATTGTCTTTCCAACATCGTGGA
    GAGAATCTTTACAGACACGTCCGCGTCCACTGTGTTATCAGGCCAGGAGGGTTCCGAGGGTAGCCCCTGCTCTCCACAAG
    AGGGATCTATCCTGAGCGAAACGGGGGCACCCGTGCCGTCACCGACCAACTGCCCACAGCCGTCCCATGACCCCATCTAC
    CAAGTGCTATGAACACAGTGATAGTATGGCTACATTCATGAAAACGAATCGATTCCTATAAATGAAGAAAACAACAAACG
    GACAGAGTTGCAGAATGTTGCTGTAGTAGAAGAATAGGATGGCAAAGCTGTCATTCCTTCTAATAGAAAGGTTTCAATTC
    CTTGAAGATCAGTCATTTGCTTCCCATTGATCACGTTTTATGAGATATAATTTACGACGTATTTATGTAGGCCTGAGTGT
    AATCGTATATGAAATATTTGACTACTTTCTTAAACTTGTGTGTGTGTTGTCATCGTCATCTTTTGTTCTTTCCTTGCCAT
    TTTTATTGTTTATGACAATAGAGGACCATTTTTGTATATGTGTAAATAAGAGGTGATTTGTTAAAAAAAAGAAGAAAAAA
    ATAACAAAAAGTGTTTTATGTATTTAAT
    Send to
    		or

    >DQ317527.1 Salmo salar Myoblast Determination Protein-1c
    ATGGAGTTGTCGGATATTTCGTTCCCTATCACCTCCGCTGATGACTTTTATGACGACCCTTGCTTCAACACCAGCGACAT
    GCATTTTTTCGAAGACATGGACCCCCGGTTAGTCCATGTTGGTCTCCTCAAGCCAGACGACCATCATCATAACGAAGACG
    AGCACATCAGGGCCCCAAGCGGGCACCACCAAGCCGGTAGGTGCCTCCTCTGGGCATGCAAAGCCTGCAAGAGGAAAACC
    ACCAACACCGACCGGAGGAAGGCTGCTACCATGCGGGAGAGGAGGAGGCTGGGGAAGGTCAACGACGCCTTCGAGAACCT
    GAAGAGATGCACGTCGAACAACCCCAATCAGAGGCTTCCAAAGGTGGAGATCCTGAGAAATGCCATCAGCTACATCGAGT
    CTCTGCAGTCTCTGCTCAGGGGCCAGGACGGCGAAAACTACTACCCTTCGCTGGAGCACTACAACGGGGACTCTGACGCA
    TCCAGCCCACGGTCCAACTGCTCTGATGGAATGATGGAATATAATGCCCCGACGTGCACGTCCGCAAGACGAAGCAGCTA
    TGAAAGCTCTTATTTCGCGGAGACTCCAAATGCTGATGCCAGAAGCAAAAAGAACGCAGTCATCTCCAGTTTGGATTGTC
    TATCCAGCATCGTGGAGAGAATCTCAACAGACACGTCCGCGTGCACTATGTTATCAGTTCAGGAGGGTAGCCCCTGCTCT
    CCCCAAGAGGGATCTATCCTGAGCGAGACAGGGGCAACCGTGCCGTCACCGACCAAGTGCCCACAGCCCTCCCATGACCC
    CATCTACCAAGTGCTATGAAAAGACAGTGATAGTATATGGCTACATTCATGAAAATGAATCGATTCATGTAAATGAAGAA
    AACAACGAACGGACAGGGTTGCAGAATGTTGCTGTACTTTAAGAATAGGATGGCAAAGTTGCCTTTCCTTCCTTTAATAG
    AACGTTTTAAATTCTTTGAAATTCAATCATTGGCATCCCATGGGTCACGTTTTATAAGATATAATTTACCGATTTATTTA
    TGTAAATGTCATCGTATATGAAATATTTGACCACTTTCTTTCCCTTGCCATTTGAATTGTTGATGACAATAGAGGACCAT
    TTTTGTATAGGTCTATGTGTAAATAAGAGGTGAAACGAAAAAATGTTTTTAATGTATTTAATGTTGCCTGTTTATATTCA
    GGGGTGCGTGGTTTGTTTGTTGTGAGAAATGTTTAACTTTATATTTATACATCTTAAAATTTGTGAAAGTCGTTCGATGT
    TATTATAAATAAATGACTATGACTAGAAAAAAAAAAAAAAAAAAA
    Send to
    		or



    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by M.Iliopoulou E.Sarropoulou
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