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MyoD (Myoblast determination protein)

Organism
Ictalurus punctatus (Channel catfish)
Phylogeny
Paralogs
Sequencing Methods
MyOD-1: Sanger sequencing
Citations
  • Gregory DJ., Waldbieser GC., Bosworth BG. (2004). Cloning and characterization of myogenic regulatory genes in three Ictalurid species. Animal Genetics 35(6):425-430. doi:10.1111/j.1365-2052.2004.01193.x.
  • Macqueen DJ., Johnston IA. (2008). An update on MyoD evolution in teleosts and a proposed consensus nomenclature to accommodate the tetraploidization of different vertebrate genomes. PLoS ONE 3(2):E1567. doi:10.1371/journal.pone.0001567.
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    Sequence >AY534328.1 Ictalurus punctatus Myoblast determination protein-1
    TAGAGGCAGGATAAACTCTGGGCTACATCTTTTTTACGCACAAAAAAATCCCCAAATTTTTTTTGAAGAAAGGATGGAGC
    TGTCGGATATTCCGTTCCCCATCCCATCGGCTGATGATTTCTATGACGACCCCTGCTTTAACACCAGCGACATGCACTTC
    TTCGAAGACCTGGACCCCAGGCTAGTGCACGTGAGCTTGCTTAAGTCGGATGAACACAACCACATGGAGGATGAACATAT
    CCGGGCGCCGAGCGGGCACCACCAAGCGGGCAGGTGTCTCCTGTGGGCGTGTAAAGCATGCAAGAGGAAAACCACCAACG
    CGGACAGGCGCAAAGCCGCAACTATGAGAGAGAGGAGACGCCTGAGCAAGGTCAACGACGCTTTTGAAACCCTGAAGAGG
    TGCACGTCTACTAACCCTAACCAGAGGCTGCCCAAGGTGGAGATCCTGAGAAACGCCATCAGTTACATCGAGTCTCTCCA
    AGCCTTACTCAGAAGTCAAGAGGAGAACTACTACCCGGTTCTGGAGCAATACAGCGGAGATTCAGACGCCTCCAGTCCCA
    GGTCCAACTGCTCAGATGGCATGGTGAGAACCTTCTGCAGCTTTGACATTCCTTCAATATAATATTCGCAGTTCGTTTAT
    TAGGCTACAATGGCTCCCCCCCCTCACTATCCAGCTAGTCATGTTATTTAGATTAGATTAGATTAGATTAGATTAGATTT
    TAAAATAGCTAATGAATTAAAATGATTCGTGTTGCGTGTTTCCTAGATGGATTTTAATGGCCCTGCTCGACCGTCCGGAA
    GACGAAACAGCTATGACACCACGTACTTCAACGAAACTCCAAATGGTAAACACGAATGTCCCTCAATGCCATTCTAACAA
    GAAATACGCTTTGGATATGCTGTAATGAAATACTAACCGTTTTGTTTAATTATGGGCTTTCCAGGAGATGTGAGGAGTAA
    TAAGAACCCAGTGGTGTCGAGTTTGGACTGTCTGTCCAGCATCGTGGAGCGGATCTCCACTGAGTCTCCCGCCGCCTCCT
    CGCTCCCTGCGGCTGAGCTGTGTGACGGGGTCACCGGCTCTCCACCCGAGACAAGCGTGCCTTCTCCAAATAACACCTGC
    AGCCCGTCCGGCCCGACCCACGACCCCATCTATCAGGTGCTCTGAATGGAAAGGAGGAAACAGCCATGCATACATCCACA
    ACATTTCAGAGAACGCGAGAGACAATGTAAATTAATGAGGACTACTACTCCTGTCATGAACTGAGAAAAAAATACAAACT
    ACCACCAAACTGTTAAAGACGTTGGAGAACAGAAGAAAAATCCTTTAGATGTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
    TCTTTCTTTCTTTCTAGAAAATTGTCAAATTCCATTATGATCGTGGCTCTACAGAAGTCAGTTTCTTAACTCAGCTTATT
    TATATAATAATGTCAGTGTTGCCATATGTGACCATATTTTTCCCTTTCTTTCGTTCTTTCGTTCTTTCTTTCTTTCTTTC
    TTTCTTTCTTTCTTTCTTTCTTTCTTTTTGAGACTACTTTCTGTCACTTTCATCTTTTATTATTTCCTAATTATTTACAG
    AGAATAACCACTGCAGATATGAAAATTAGAGGACCATTTTTTTGTACATGTGTATATAAGAGCTGTTTTGTTAAAAAAAA
    CAAACANACATACAAACAAACAAACAAAAAAAAAAACCCGGAGAAACGAACAAACATANNTTGCGTATTTAATTT
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    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by M.Iliopoulou_
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