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MyoD (Myoblast determination protein)

Organism
Takifugu rubripes (Pufferfish)
Phylogeny
Paralogs
MyOD-1α,
AY445315.1
MyOD-1β,
AY445316.1
MyOD-1γ,
AY445317.1
Sequencing Methods
MyOD-1α: Sanger sequencing

MyOD-1β: Sanger sequencing

MyOD-1γ: Sanger sequencing

MyOD-2: Sanger sequencing
Citations
  • Fernandes JM., Kinghorn JR., Johnston IA. (2007). Differential regulation of multiple alternatively spliced transcripts of MyoD. Gene 391(1-2):178-185. doi:10.1016/j.gene.2006.12.015.
  • Macqueen DJ., Johnston IA. (2008). An update on MyoD evolution in teleosts and a proposed consensus nomenclature to accommodate the tetraploidization of different vertebrate genomes. PLoS ONE 3(2):E1567. doi:10.1371/journal.pone.0001567.
  • Fish-it.org
    		•
    Sequence >AY445315.1 Takifugu rubripes Myoblast Determination Factor-1a (splice variant)
    ATGGAGCTGTCGGAGATCTCCTTCTCCATCCCTGCCGCTGACGACTTCTATGACGACCCCTGCTTCAGCACCTCTGACAT
    GCACTTTTTTGAGGACATGGACCCCCGCCTGGTCCACGCGGGCCTGCTGAAGCCGGATGACTGCTGCTCTTCATCCTCAC
    TCTCTCCTTCCTCATCTTCCGCTTCCCCATCGTCCCTTCTGCACATTCATCATCACACCGAGGCGGAGGACGACGAGCAC
    ATCCGTGCACCCAGCGGGCACCACCATGCAGGCCGCTGTCTCCTCTGGGCCTGCAAGGCCTGCAAGCGGAAGACTACAAA
    CGTGGACCGACGGAAGGCGGCGACGCTGCGTGAGCGGCGGCGGCTAAGCAAAGTCAACGAGGCCTTCGAGACGTTGAAAC
    GCTGCACAAACACCAACCCGAACCAGCGGCTGCCCAAAGTGGAGATCCTGAGGAACGCCATCAGCTATATCGAATCCCTG
    CAGGCACTGCTCCGAGGCGGCCAGGACGAGGCCTTCTACACCGTTCTGGAGCACTACAGCGGGGACTCCGACGCGTCTAG
    CCCTCGCTCCAACTGCTCCGATGGCATGACGGATTTTAACGGTCCGACCTGTCAATCAAACAGAAGAGGAAGCTATTACA
    GCAGCTATTTCTCGCAAACTCCAAAAGGCAGCCTGAAGGCGGAGCGGAACTCCAGTCTCGACTGTCTGTCCAGCATCGTG
    GAGCGGATCTCCACCGCCACCAGCAGCGGGCCGCCACCCGTAGACGGCCGCGGGTCTCCTGGGCCCCTTCAGGCCTCCTC
    TCCAAGGAGCAGTCGGGAACCAAACCTGATTTATCAGGTCCTG
    Send to
    		or

    >AY445316.1 Takifugu rubripes Myoblast Determination Factor-1β (splice variant)
    ATGGAGCTGTCGGAGATCTCCTTCTCCATCCCTGCCGCTGACGACTTCTATGACGACCCCTGCTTCAGCACCTCTGACAT
    GCACTTTTTTGAGGACATGGACCCCCGCCTGGTCCACGCGGGCCTGCTGAAGCCGGATGACTGCTGCTCTTCATCCTCAC
    TCTCTCCTTCCTCATCTTCCGCTTCCCCATCGTCCCTTCTGCACATTCATCATCACACCGAGGCGGAGGACGACGAGCAC
    ATCCGTGCACCCAGCGGGCACCACCATGCAGGCCGCTGTCTCCTCTGGGCCTGCAAGGCCTGCAAGCGGAAGACTACAAA
    CGTGGACCGACGGAAGGCGGCGACGCTGCGTGAGCGGCGGCGGCTAAGCAAAGTCAACGAGGCCTTCGAGACGTTGAAAC
    GCTGCACAAACACCAACCCGAACCAGCGGCTGCCCAAAGTGGAGATCCTGAGGAACGCCATCAGCTATATCGAATCCCTG
    CAGGCACTGCTCCGAGGCGGCCAGGATGAGGCCTTCTACACCGTTCTGGAGCACTACAGCGGGGACTCCGACGCGTCTAG
    CCCTCGCTCCAACTGCTCCGATGGCATGACGGATTTTAACGGTCCGACCTGTCAATCAAACAGAAGAGGAAGCTATTACA
    GCAGCTATTTCTCGCAAACTCCAAAAGCATTTGCTCCGCCTGGCTCTGCCATATTTGTTCCGCCTGGTTCTGTCAACAAT
    TGCTCCGCCTGGTTCTGTTTCGCAGGCAGCCTGAAGGCGGAGCGGAACTCCAGTCTCGACTGTCTGTCCAGCATCGTGGA
    GCGGATCTCCACCGCCACCAGCAGCGGGCCGCCACCCGTAGACGGCCGCGGGTCTCCTGGGCCCCTTCAGGCCTCCTCTC
    CAAGGAGCAGTCGGGAACCAAACCTGATTTATCAGGTCCTG
    Send to
    		or

    >AY445317.1 Takifugu rubripes Myoblast determination protein-1γ (splice variant)
    ATGGAGCTGTCGGAGATCTCCTTCTCCATCCCTGCCGCTGACGACTTCTATGACGACCCCTGCTTCAGCACCTCTGACAT
    GCACTTTTTTGAGGACATGGACCCCCGCCTGGTCCACGCGGGCCTGCTGAAGCCGGATGACTGCTGCTCTTCATCCTCAC
    TCTCTCCTTCCTCATCTTCCGCTTCCCCATCGTCCCTTCTGCACATTCATCATCACACCGAGGCGGAGGACGACGAGCAC
    ATCCGTGCACCCAGCGGGCACCACCATGCAGGCCGCTGTCTCCTCTGGGCCTGCAAGGCCTGCAAGCGGAAGACTACAAA
    CGTGGACCGACGGAAGGCGGCGACGCTGCGTGAGCGGCGGCGGCTAAGCAAAGTCAACGAGGCCTTCGAGACGTTGAAAC
    GCTGCACAAACACCAACCCGAACCAGCGGCTGCCCAAAGTGGAGATCCTGAGGAACGCCATCAGCTATATCGAATCCCTG
    CAGGCACTGCTCCGAGGCGGCCAGGACGAGGCCTTCTACACCGTTCTGGAGCACTACAGCGGGGACTCCGACGCGTCTAG
    CCCTCGCTCCAACTGCTCCGATGGCATGGTGGGTCCGGGACCGGGAGGCATTAATGTGCATTAATTTCTTTAACGTTTGC
    TCTCTTGTTATTTCGATAAAGTCTTTTTAGGCTTTGGATTTTTTCCAGTTTGAATTTGCTGCAAATTTTTGGATTCAAAC
    TAAGTCATCTGATTTTAATGTTTATTTGTGCTGTGTGACATTTGTGTTTAATGCTCATTGAAAATCAGATATTTAGCCAA
    TAAGGTTAAGTTTCAAACGATTTTTTTTTTACATTTCAGTTCTGTATTGAACAATCATTCTTCACAGTTTTGATTGTTTT
    CTTTGATTCTTTCAAAATATTTAAATTTCTTGCTCCGTTTCTTTTATTGTGAAAGGATTTTGATCCGCCTGATTTTAACA
    GGTTTATTGTTAATCTTCAGACGGATTTTAACGGTCCGACCTGTCAATCAAACAGAAGAGGAAGCTATTACAGCAGCTAT
    TTCTCGCAAACTCCAAAAGGCAGCCTGAAGGCGGAGCGGAACTCCAGTCTCGACTGTCTGTCCAGCATCGTGGAGCGGAT
    CTCCACCGCCACCAGCAGCGGGCCGCCACCCGTAGACGGCCGCGGGTCTCCTGGGCCCCTTCAGGCCTCCTCTCCAAGGA
    GCAGTCGGGAACCAAACCTGATTTATCAGGTCCTG
    Send to
    		or

    >DQ413000.1 Takifugu rubripes myoblast determination protein 2
    ATGGATCTGTCCGAGCTGGTCTTCCCTCTCTCGGCCGACGACCTCTACGATGACCCCTGCTTCAGCAGTGGGGACCTGAA
    CTTCTTCGATGACCTGGACTCTCGCCTACTGCTGAAACCAGAAGGCCACCAGCACCTCCATCACCACGTCCCCAGCGCAG
    AGGAGGAGCTGGAGGAGGAGACGGTGGTGGAAGAGCACGTGAGGGCACCAGGGGGCCTCCACCAGGCCGGCCGATGCCTG
    CTCTGGGCCTGCAAAGCCTGTAAAAGGAAGACGACCCACGCGGACCGGCGGAAGGCGGCGACCATGCGGGAGCGGCGACG
    ACTGAGCAAAGTCAACGACGCCTTTGAGACGCTAAAGCGCTGCACCGCCTCCAACCCCAACCAGAGGCTCGCCAAGGTGG
    AGATCCTGCGCAACGCCATCAGCTACATCGAGTCCCTGCAGGCCCTGCTGAGGACTTCGGGTCAAGACCAGAGCTTCTAC
    CCACCGCTGGAGCCCTACGGTGCAGATTCAGAGGCCTCCAGTCCACAATCCAACTGCTCGGATGGCGCGATGGATTATGT
    TTCTCCGTGTGTGACGTCAAACGCAAAGAACAACAGATCAAGGAGAAACATCCAGACAACAGGCGATTCCAGCAGTAAAC
    AGTGTCTGGTTTCCAGTTTGGAATGTCTGTCCAGCATCGTGGAGCGGATCAGCACGGACCCGACAGTGGTGGCCCCTGTG
    GGGGACAGCGTGGTTCCAAGGGGACCCGGATCACCTCAGAGCAGCCCTGCAGGGATCTACGAGCCGCTCTGA
    Send to
    		or



    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by M.Iliopoulou
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