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GAPDH (Glyceraldehyde-3-phospate dehydrogenase)

Organism
Sarda sarda (Atlantic bonito)
GO term(s)
Molecular Function: GO:0004365
Cellular Component: GO:0097452
Biological Process: n/a
Paralogs
GAPDH-1,
GAPDH-2
Sequencing Methods
GAPDH-1: Illumina paired end sequencing

GAPDH-2: Illumina paired end sequencing
Citations
  • Sarropoulou E., Nousdili D., Kotoulas G., Magoulas A. (2011). Functional divergences of GAPDH isoforms during early development in two perciform fish species. Marine biotechnology New York NY 13: 1115–1124. doi:10.1007/s10126-011-9375-6.
  • Sarropoulou E., Moghadam HK., Papandroulakis N., De la Gándara F., Garcia AO., Makridis P. (2014). The Atlantic bonito (Sarda sarda, Bloch 1793) transcriptome and detection of differential expression during larvae development. PLoS One 9 (2): e87744. doi:10.1371/journal.pone.0087744
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    Sequence >Sarda sarda glyceraldehyde-3-phosphate dehydrogenase-1
    CTAATCCTCACGTTTGTGAAGGCGCCCCGCTCTCACTTCTTCCAGCCGAGGACAGAACAGACCGAGGTGCCTTCACAAAC
    GTGAGGATTAGATCATATCAAGCAACATGGTGAAGATTGGAATCAACGGATTCGGACGTATCGGCCGTCTGGTGACCCGC
    GCCGCCGCCTCAGGAGGCAAGGTCGAGGTCGCAGCCATCAACGATCCCTTCATTGACCTGGACTACATGGTCTACATGTT
    CAAGTATGACTCCACTCACGGTGTGTGGAAGCACGGAGAGGTGAAGGCCGAGGGCGGCAAGCTGGTCATCGGCAGCATGC
    ACATCACAGTCTTCCACGAGAGAGACCCCGCCAACATCAAATGGAGCGATGCTGGCGTCGACTACGTTGTGGAGTCCACC
    GGTGTGTTCACCACCATCGAGAAAGCCTCTGCTCACCTGCAGGGCGGCGCCAAGAGGGTGGTGATCTCTGCCCCCAGCGC
    CGACGCTCCCATGTTCGTTATGGGCGTCAACCACGAGAAGTACGACAACTCCATGAAGGTTGTCAGCAACGCTTCCTGCA
    CAACCAACTGCCTGGCTCCCCTCGCCAAGGTCATCAACGACAACTTTGGCATCGTTGAGGGTCTCATGAGCACAGTCCAC
    GCCATCACCGCCACACAGAAGACCGTTGATGGTCCCTCTGGTAAGCTGTGGAGGGACGGACGTGGTGCCTCCCAGAACAT
    CATCCCCGCCTCCACCGGAGCCGCCAAGGCTGTGGGCAAGGTCGTCCCCGAGCTGAACGGCAAACTGACCGGTATGGCTT
    TCCGTGTTCCCACCCCCAACGTGTCTGTCGTTGACCTGACTGTCCGTCTGGAGAAGCCCGCCAAGTACGACGACATCAAG
    AAGGTTGTGAAGGCCGCCTCTGAGGGACCCATGAAGGGAATTCTGGGATACACAGAGGACCAGGTTGTCTCCACAGACTT
    CAACAGCGACACTCACTCCTCCATCTTTGACGCCGGCGCCGGCATCGCTCTCAACGAGCATTTCGTCAAGCTGGTCTCAT
    GGTACGACAATGAGTTCGGCTACAGCAACCGTGTGTGCGACCTGGTCCTGCACATGTTCACCAAGGAGTAAA
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    >Sarda sarda glyceraldehyde-3-phosphate dehydrogenase-2
    AAGATGGAGGAGTGGGTGTCACCGACGAAGTCAGAGGACACCACCTGGTCCTCAGTGTAGCCCAGCACTCCCTTCATGGG
    CCCATGTGAGGCCTTCTTGACGGCTTCCTTAATCTCAGCATAAGATGCAGGCTTGGACAGACGGCAGGTCAGGTCCACCA
    CTGACACATCAGCCACTGGCACCCTGAAGGCCATGCCGGTCAGCTTACCGTTGAGATCGGGGATGACTTTGCCCACTGCC
    TTGGCGGCACCAGTGGAGGCTGGAATGATGTTCTGGTGGGCACCGCGGCCATCACGCCAGGCCTTGGCGCTGGGACCATC
    CACTGTCTTCTGGGTGGCTGTGTATGCATGGACTGTAGTCATGAGAGCCTCCTCAATTCCAAAGTTATCATGGATGACTT
    TGGCCAGGGGGGCCAGGCAGTTGGTGGTGCAGGAGGCATTACTGACGATGGTCATGGAGGAGGGGTCGTATTTGTCCTCG
    TTGACGCCCATGACAAACATGGGAGCATCAGGTGAGGGGGCGGACACTACCACACGCTGAGCTCCACCCTGGAGGTGAGA
    AGAGGCCTTCTCCACACTGAGGAAGACTCCAGTGGACTCAACAACATACTTGGCTCCAGCACTGCCCCAAGGGATCTCTG
    CTGGCTTCATACACTGGAAGACGGAGATGGCGTTGCCATCGACGATGAGCTTGCCATCCTCTTGGGCGACCTCTCCATGG
    TAACGGCCGTGGGTGGAGTCATACTTG
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    		or



    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by E.Sarropoulou
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