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GAPDH (glyceraldehyde-3-phosphate dehydrogenase)

Organism
Sparus aurata (Gilthead sea bream)
GO term(s)
Molecular Function: GO:0004365
Cellular Component: GO:0097452
Biological Process: n/a
Gene Expression
GAPDH-1

Gene expression of GAPDH−1 during the gilthead sea bream development.


GAPDH-2

GAPDH-1 and GAPDH-2 expression during development
Gene Structure


Phylogeny
Synteny
Paralogs
Sequencing Methods
GAPDH-1: Sanger sequencing

GAPDH-2: Assembly of homologous sequences of the gilthead sea bream for each gene were retrieved from the NCBI non-redundant (nr) or EST database.
Citations
  • Sarropoulou E., Nousdili D., Kotoulas G., Magoulas A. (2011). Functional divergences of GAPDH isoforms during early development in two perciform fish species. Marine Biotechnology, New York NY 13: 1115–1124. doi:10.1007/s10126-011-9375-6.
  • Fernández CG., Roufidou C., Antonopoulou E., Sarropoulou E. (2013). Expression of developmental-stage-specific genes in the gilthead sea bream Sparus aurata L. Marine Biotechnology 3: 313-20. doi: 10.1007/s10126-012-9486-8.
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    Sequence >DQ641630 Glyceraldehyde 3-phosphate dehydrogenase
    ATGGTGAAAGTCGGTATCAATGGATTCGGCCGCATCGGTCGTCTGGTGACCCGTGCTGGCTTCACCTCCAAGAAGGTGGA
    GATTGTGGCCATCAATGACCCCTTCATCGACCTGGAGTACATGGTCTACATGTTCAAGTATGACTCCACCCACGGCCGCT
    ACCATGGCGAAGTCAAGATTGAGGGCGACAAACTTGTCATCGACGGACATAAAATCACTGTTTTCCACGAGAGGGACCCA
    GCTCACATCAAATGGGGTGATGCTGGTGCCCAGTACGTTGTTGAGTCCACTGGTGTGTTCACCACCATTGAGAAGGCCTC
    TGCTCACTTGAAGGGCGGTGCCAAGAGAGTCATCATCTCTGCACCCAGCGCCGACGCTCCCATGTTTGTCATGGGTGTCA
    ACCATCAGAAGTACGACAAGTCACTCCCAGTGGTCAGCAACGCCTCCTGCACAACCAACTGCCTGGCCCCCCTGGCCAAG
    GTCATCAACGACAACTTCGGCATCATTGAGGGTCTGATGAGCACAGTTCATGCCATCACTGCCACCCAGAAGACCGTGGA
    CGGCCCCTCCGGCAAGCTGTGGAGGGACGGCCGTGGTGCCAGCCAGAACATCATCCCCGCCTCCACCGGTGCTGCCAAAG
    CTGTCGGCAAGGTCATCCCCGAGCTCAACGGCAAGTTGACCGGCATGGCCTTCCGTGTCCCCACCCCCAACGTGTCAGTG
    GTTGACCTGACAGTCCGCCTGGAGAAACCTGCCAAATACGATGACATCAAGAAGGTCGTCAAGGCTGCAGCTGAAGGACC
    CATGAAGGGCATCCTGGGATACACAGAGCACCAGGTCGTCTCCACAGACTTCAACGGTGACAGCCACTCCTCCATCTTTG
    ATGCTGGCGCTGGCATCGCCCTCAACGACCACTTTGTCAAGCTGGTCACATGGTACGACAATGAGTTCGGCTACAGCAAC
    CGTGTCTGCGACCTGATGGCCCACATGGCCTCCAAGGAGTAG
    Send to
    		or

    >Sparus aurata glyceraldehyde 3-phosphate dehydrogenase-2
    ATGTCAGATCTCTGTGTTGGAATCAATGGCTTCGGTCGTATTGGCCGTCTGGTCTTGAGGGCTTGCCTTCAGAAGGGCAT
    CAAGGTTGTGGCCATCAATGACCCCTTCATTGACTTGAAGTACATGGTCTACATGTTCAAGTATGACTCCACCCACGGCC
    GTTACCATGGTGAGGTCAGTGAAGAAGATGGCAAGCTCATGGTCGACGGCAACGCCATCGCTGTCTACCAGTGCATGAAG
    CCAGCAGAGATCCCCTGGGGCGATGCTGGAGCCAAGTACGTTGTTGAGTCCACTGGAGTCTTCCTCAGTGTGGATAAGGC
    CAACGCTCACATCCAGGGTGGAGCACAGCGTGTGGTTGTGTCCGCCCCCTCACCCGATGCTCCAATGTTTGTCATGGGAG
    TTAATGAGGAGAAATATGACCCGGCCACCATGAAGATCGTCAGCAATGCCTCCTCCACCTCCCACTGCCTGGCCCCCCTG
    GCCAAAGTCATCCATGATAACTTTGGCATTGAGGAGGCTCTCATGACTACAGTCCATGCATACACAGCCACCCAGAAGAC
    AGTGGATGGTCCCAGCGCCAAGGCCTGGCGTGATGGCCGTGGTGCCCACCAGAACATCATTCCAGCCTCCACTGGTGCCG
    CCAAGGCAGTCGGCAAAGTTATCCCCGAGCTCAATGGTAAGCTGACAGGCATGGCCTTCAGGGTGCCAGTGGCTGATGTG
    TCAGTGGTGGATCTGACATGCCGTCTGTCCAAGCCTGCATCTTACGCTGAGATTAAGGAAGCCTGCAAGAAGGCCGCACA
    TGGGCCCATGAAGGGAGTGCTGGGTTACACCGAGGACTCTGTGGTGTCCTCTGACTTCATCGGTGACACCCACTCCTCAA
    TCTTTGATGCTGGCGCTGGCATCTCCCTCAACGACAACTTTGTCAAGCTCATTTCCTGGTATGATAATGAGTCCGGCTAC
    AGCCACCGTGTTGCTGACCTCCTGCTGTACATGCACTCCAAGGACTA
    Send to
    		or



    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by E.Sarropoulou
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